Hg_chrom3_TN10mRNA_5836
Organism: Heterodera glycines Gene Locus: chr3:7777421-7779882 Feature type: polypeptideProtein Sequence
Length: 464
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 1.103 | 0.784 | 0.669 | 1.688 | 1.16 | 0.641 | 1.401 | 0.67 | 1.34 | 1.045 | 2.662 | 1.736 | 0.705 | 1.188 | 0.893 | 0.742 | 0.751 | 1.492 | 0.254 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5543
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRIFMSMDFGKWAQRKCRE
|
— | — |
61-107
|
0.942
|
— | — |
0.000
|
— | — |
0.440
|
0.204
|
0.022
|
0.606
|
0.126
|
0.217
|
0.202
|
0.013
|
0.144
|
0.342
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003579
|
2.000
|
1.000
|
Hsc_gene_1118.t1
|
— | — | — |
KAI1704744.1 ecdysteroid kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.900|GO:0110165_0.890|GO:0005622_0.848|GO:0016020_0.812|GO:0005737_0.787|GO:0043226_0.784|GO:0043229_0.767|GO:0043227_0.729|GO:0043231_0.715|GO:0005777_0.540|GO:0042579_0.540
|
IPR011009+37-416+|IPR012877+68-441+|IPR015897+187-378+|IPR052961+67-442+
|
SM00587+187-378+
|
PF07914+68-441+Uncharacterized_oxidoreductase_dhs-27
|
— |
PTHR23020+67-442+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
446-464
|
1.000
|
1-445
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
53253.880
|
6.328
|
-1.500
|
29.957
|
11.853
|
50.000
|
50.000
|
15.517
|
14.440
|
43.319
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1464.749
|
1886.750
|
2192.651
|
1086.906
|
813.109
|
1092.501
|
1604.670
|
1033.909
|
2187.720
|
1126.049
|
1581.051
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.933
|
-0.904
|
-0.450
|
0.441
|
0.566
|
— |
0.778
|
— | — | — | — | — |
No JSON data available for plots.