SCN Proteipedia

Hg_chrom3_TN10mRNA_5841

Organism: Heterodera glycines Gene Locus: chr3:7798848-7801432 Feature type: polypeptide

Protein Sequence

Length: 473

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.565	1.426	0.692	0.583	1.409	1.193	0.805	1.163	1.456	1.114	0.929	1.617	1.351	0.854	0.906	1.148	0.555	1.185	1.138	0.933	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5548	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	40-75	0.946	—	—	0.000	—	—	0.420	0.190	0.025	0.787	0.099	0.190	0.171	0.040	0.286	0.017

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007887	1.000	1.000	Hsc_gene_5.t1	Hsc_gene_5.t1	—	Q8CEE6.3 PAS domain-containing serine/threonine-protein kinase [Mus musculus]	KHN79379.1 PAS domain-containing serine/threonine-protein kinase, partial [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.978\|GO:0009987_0.936\|GO:0065007_0.854\|GO:0050789_0.840\|GO:0050794_0.818\|GO:0005575_0.802\|GO:0110165_0.796\|GO:0003674_0.794\|GO:0003824_0.793\|GO:0016740_0.793\|GO:0016772_0.781\|GO:0140096_0.781\|GO:0016301_0.768\|GO:0004672_0.763\|GO:0016773_0.763\|GO:0005622_0.708\|GO:0004674_0.694\|GO:0008152_0.636\|GO:0044237_0.633\|GO:0005737_0.615\|GO:0043170_0.600\|GO:0044238_0.595\|GO:0050896_0.592\|GO:0019538_0.589\|GO:0006793_0.584\|GO:0006796_0.582\|GO:0051716_0.570\|GO:0007154_0.562\|GO:0023052_0.561\|GO:0036211_0.554\|GO:0043412_0.554\|GO:0005488_0.553\|GO:0016020_0.541\|GO:0006468_0.510\|GO:0016310_0.510	IPR000719+133-387+\|IPR008271+260-272+\|IPR011009+130-399+\|IPR017441+139-166+	SM00220+133-387+	PF00069+133-387+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000351+222-403+PAS_domain-containing_serine/threonine-protein_kinase	PTHR24346+96-444+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-473	3dls_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.693	53570.100	6.147	-2.500	25.159	11.839	47.357	52.643	12.896	12.262	46.934

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	grey60	1958.913	3075.881	846.379	880.620	1726.817	3705.531	1779.020	3305.705	1122.072	1983.707	1614.435

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.092	-1.942	0.166	0.939	1.117	-1.048	-0.269	-0.752	—	—	—	—	—

No JSON data available for plots.

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