Hg_chrom3_TN10mRNA_5844
Organism: Heterodera glycines Gene Locus: chr3:7809600-7813113 Feature type: polypeptideProtein Sequence
Length: 639
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 0.873 | 1.224 | 0.162 | 1.304 | 1.766 | 0.876 | 1.095 | 1.287 | 1.438 | 1.399 | 1.473 | 0.782 | 0.482 | 0.99 | 0.872 | 0.847 | 0.83 | 0.602 | 0.644 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5551
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.364
|
0.116
|
0.014
|
0.658
|
0.256
|
0.140
|
0.231
|
0.012
|
0.152
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007889
|
1.000
|
1.000
|
Hsc_gene_8.t1
|
Hsc_gene_7.t1;Hsc_gene_8.t1
|
— |
Q6P542.1 ATP-binding cassette sub-family F member 1 [Mus musculus]
|
KAI3420404.1 ATP-binding cassette sub- F member 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.822|GO:0110165_0.812|GO:0005622_0.722|GO:0008150_0.598|GO:0005737_0.564
|
IPR003439+92-336_108-268_421-635_438-567+|IPR003593+116-320_446-612+|IPR017871+240-254_539-553+|IPR027417+87-327_90-368_396-637_400-621+|IPR050611+18-632+
|
SM00382+116-320_446-612+
|
PF00005+108-268_438-567+ABC_transporter
|
G3DSA:3.40.50.300:FF:000011+90-352+Putative_ABC_transporter_ATP-binding_component|G3DSA:3.40.50.300:FF:002050+396-635+ABC_transporter,_class_F
|
PTHR19211+18-632+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-69;340-409
|
2.000
|
70-339;410-639
|
5zxd_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
71771.700
|
7.016
|
4.000
|
30.829
|
7.981
|
52.739
|
47.261
|
16.275
|
14.554
|
44.288
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.