Hg_chrom3_TN10mRNA_5846
Organism: Heterodera glycines Gene Locus: chr3:7814008-7814714 Feature type: polypeptideProtein Sequence
Length: 70
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.332 | 1.329 | 1.299 | 0.493 | 1.19 | 2.198 | 0.17 | 0.714 | 1.587 | 1.158 | 1.299 | 2.521 | 1.19 | 1.099 | 1.749 | 0.612 | 0.703 | 0.649 | 0.0 | 1.261 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5553
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KKVAEQLEREKRIRRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.244
|
0.204
|
0.012
|
0.380
|
0.214
|
0.481
|
0.423
|
0.040
|
0.654
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI3420402.1 Guanine nucleotide-binding protein subunit gamma-1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007186
|
GO:0005575_0.915|GO:0110165_0.910|GO:0016020_0.670|GO:0008150_0.607|GO:0065007_0.559|GO:0050789_0.550|GO:0009987_0.539|GO:0050794_0.531|GO:0071944_0.518|GO:0005886_0.513
|
IPR015898+2-70_6-68_6-69+|IPR036284+2-62_2-69+
|
SM00224+6-68+|SM01224+2-68+
|
PF00631+6-69+GGL_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-70
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
8429.700
|
8.964
|
2.500
|
32.857
|
10.000
|
55.714
|
44.286
|
18.571
|
14.286
|
37.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey60
|
665.255
|
365.338
|
590.505
|
656.488
|
785.244
|
759.723
|
582.879
|
800.327
|
619.024
|
743.535
|
690.173
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.463
|
0.709
|
0.262
|
0.226
|
— |
-0.373
|
— |
-0.315
|
— | — | — | — | — |
No JSON data available for plots.