Hg_chrom3_TN10mRNA_5847
Organism: Heterodera glycines Gene Locus: chr3:7814810-7816868 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 0.92 | 1.308 | 0.0 | 2.638 | 1.199 | 0.514 | 0.54 | 0.959 | 1.361 | 1.635 | 1.27 | 1.299 | 0.138 | 1.542 | 0.668 | 0.708 | 0.872 | 0.277 | 0.212 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5554
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RKKK,RKSK,KRKRAEKRRLEKEEKDRRE,KRIGKKKLAKLQAKAEAKALREQEQTEREERKQREEEIRKEEEKKRQLEEEEKRKRAEKRRLEKEEKDR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.274
|
0.467
|
0.256
|
0.154
|
0.909
|
0.203
|
0.460
|
0.034
|
0.141
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007890
|
1.000
|
1.000
|
Hsc_gene_9.t1
|
Hsc_gene_9.t1
|
— |
A8QFY9.1 DDRGK domain-containing protein 1 [Brugia malayi]
|
KAI1731756.1 DDRGK domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.875|GO:0110165_0.874|GO:0005622_0.859|GO:0043226_0.763|GO:0016020_0.755|GO:0043229_0.746|GO:0008150_0.726|GO:0043227_0.684|GO:0005737_0.658|GO:0043231_0.640|GO:0005886_0.549|GO:0071944_0.549
|
IPR019153+86-274+|IPR036388+185-242+|IPR036390+180-247+|IPR050899+68-277+
|
SM01128+86-274+
|
PF09756+86-274+DDRGK_domain
|
— |
PTHR48176+68-277+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-160
|
2.000
|
1-35;161-278
|
8qfc_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
32358.440
|
4.777
|
-11.500
|
42.446
|
6.835
|
60.072
|
39.928
|
19.424
|
23.022
|
37.770
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.