Hg_chrom3_TN10mRNA_5849
Organism: Heterodera glycines Gene Locus: chr3:7821212-7823352 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.172 | 1.333 | 0.97 | 0.613 | 0.791 | 0.608 | 0.471 | 1.186 | 1.757 | 1.602 | 0.629 | 0.465 | 1.757 | 0.608 | 1.049 | 1.412 | 0.551 | 1.108 | 0.76 | 0.814 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5556
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.153
|
0.042
|
0.027
|
0.245
|
0.903
|
0.439
|
0.643
|
0.020
|
0.145
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007892
|
1.000
|
1.000
|
Hsc_gene_11.t1
|
— | — |
Q6NZ07.1 BOS complex subunit ncln [Danio rerio]
|
KAF7634909.1 Peptidase_M28 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009966|GO:0016020
|
GO:0008150_0.912|GO:0005575_0.904|GO:0110165_0.900|GO:0016020_0.852|GO:0009987_0.848|GO:0071944_0.794|GO:0005622_0.777|GO:0005886_0.769|GO:0005737_0.750|GO:0043226_0.726|GO:0043229_0.726|GO:0043227_0.703|GO:0043231_0.693|GO:0005773_0.634|GO:0012505_0.608|GO:0051179_0.597|GO:0065007_0.596|GO:0050789_0.589|GO:0051234_0.588|GO:0050794_0.567|GO:0071840_0.553|GO:0005783_0.549|GO:0016043_0.549|GO:0051641_0.525|GO:0033036_0.509|GO:0070727_0.507|GO:0008104_0.506|GO:0045184_0.505
|
IPR007484+189-348+|IPR016574+15-409+
|
— |
PF04389+189-348+Peptidase_family_M28
|
— |
PTHR31826+15-409+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-506
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
56223.650
|
6.763
|
2.000
|
21.739
|
12.451
|
43.083
|
56.917
|
11.660
|
10.079
|
50.593
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
violet
|
1071.659
|
1107.804
|
899.368
|
1424.655
|
1499.352
|
1280.172
|
1197.640
|
831.720
|
805.221
|
994.326
|
913.281
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.530
|
0.226
|
0.772
|
— |
-0.213
|
— |
-0.725
|
0.666
|
— | — | — | — | — |
No JSON data available for plots.