Hg_chrom3_TN10mRNA_5850
Organism: Heterodera glycines Gene Locus: chr3:7824624-7826337 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.08 | 0.901 | 1.388 | 0.826 | 1.191 | 0.7 | 1.393 | 1.238 | 1.255 | 0.375 | 1.093 | 1.29 | 1.548 | 1.516 | 0.973 | 0.914 | 0.891 | 0.714 | 0.911 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5557
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.661
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|endoplasmic_reticulum|lysosome_vacuole|golgi_apparatus
|
— | — | — | — |
1-21
|
0.966
|
— | — |
0.000
|
— | — |
0.141
|
0.209
|
0.082
|
0.253
|
0.719
|
0.826
|
0.769
|
0.030
|
0.620
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007893
|
1.000
|
1.000
|
Hsc_gene_12.t1
|
Hsc_gene_12.t1
|
— |
Q21221.2 Alpha/beta hydrolase domain-containing protein aho-3 [Caenorhabditis elegans]
|
KAI3420386.1 Alpha/beta hydrolase domain-containing protein aho-3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.891|GO:0005575_0.813|GO:0110165_0.805|GO:0003674_0.616|GO:0009987_0.593|GO:0016020_0.585|GO:0008152_0.541|GO:0065007_0.534|GO:0005622_0.529|GO:0050789_0.526|GO:0043226_0.515
|
IPR022742+108-212+|IPR029058+41-297_66-286+
|
— |
PF12146+108-212+Serine_aminopeptidase,_S33
|
G3DSA:3.40.50.1820:FF:000008+83-299+Alpha/beta_hydrolase_domain-containing_protein_17B
|
PTHR12277+24-297+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;302-323
|
1.000
|
7-301
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
36245.430
|
7.315
|
4.500
|
22.601
|
11.455
|
44.272
|
55.728
|
12.693
|
9.907
|
52.322
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
midnightblue
|
1270.671
|
591.807
|
983.828
|
967.263
|
1301.254
|
1664.546
|
1872.449
|
1758.291
|
746.782
|
1571.809
|
1218.226
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
0.572
|
— |
0.396
|
0.370
|
0.181
|
— | — | — | — | — | — | — |
No JSON data available for plots.