SCN Proteipedia

Hg_chrom3_TN10mRNA_5852

Organism: Heterodera glycines Gene Locus: chr3:7829157-7834718 Feature type: polypeptide

Protein Sequence

Length: 985

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.756	1.18	0.997	0.56	1.218	1.302	0.58	1.269	1.151	1.399	0.984	1.493	1.072	0.957	1.285	1.218	0.799	0.877	1.015	0.388	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5559	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	RRLRNAIDRKRKKRTKI,RLRNAIDRKRKKRTKIFGGSKREKALIRLKRG	—	—	—	—	—	—	0.000	—	—	0.252	0.143	0.008	0.657	0.240	0.306	0.171	0.017	0.569	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003626	1.000	2.000	Hsc_gene_16.t1;Hsc_gene_16.t2	Hsc_gene_16.t1;Hsc_gene_16.t2	—	Q10925.2 Tyrosine-protein kinase sid-3 [Caenorhabditis elegans]	KAI1718855.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.937\|GO:0009987_0.885\|GO:0005575_0.830\|GO:0110165_0.821\|GO:0003674_0.785\|GO:0065007_0.770\|GO:0005622_0.764\|GO:0050789_0.764\|GO:0050794_0.729\|GO:0003824_0.673\|GO:0140096_0.673\|GO:0016740_0.672\|GO:0050896_0.649\|GO:0005737_0.641\|GO:0016772_0.629\|GO:0016020_0.609\|GO:0008152_0.608\|GO:0016773_0.599\|GO:0016301_0.596\|GO:0044237_0.590\|GO:0004672_0.589\|GO:0051716_0.586\|GO:0007154_0.576\|GO:0023052_0.566\|GO:0043170_0.565\|GO:0032502_0.560\|GO:0005488_0.555\|GO:0007165_0.546\|GO:0048856_0.538\|GO:0044238_0.524\|GO:0016043_0.519\|GO:0071840_0.519\|GO:0071944_0.516\|GO:0032501_0.510	IPR000719+113-376+\|IPR001245+113-368_189-202_227-245_278-288_297-319_341-363+\|IPR008266+233-245+\|IPR011009+105-384+\|IPR015116+451-502+\|IPR015940+943-985_945-984+\|IPR017441+119-145+\|IPR020635+113-370+\|IPR036028+366-431+\|IPR037085+449-489+\|IPR050122+108-373+	SM00165+945-984+\|SM00219+113-370+	PF07714+113-368+Protein_tyrosine_and_serine/threonine_kinase\|PF09027+451-502+GTPase_binding\|PF22931+11-65+SAM_domain-like	G3DSA:1.10.510.10:FF:000521+106-375+Tyrosine-protein_kinase_pr2\|G3DSA:4.10.680.10:FF:000001+450-489+activated_CDC42_kinase_1_isoform_X1	PTHR24416+108-373+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	519-731	2.000	1-518;732-985	4hzs_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.734	111198.750	7.534	12.500	28.122	9.036	51.675	48.325	15.330	12.792	47.716

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1163.879	1762.192	1195.486	993.335	950.131	1184.240	2009.034	1217.788	958.173	881.261	914.224

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.790	-0.964	-0.158	—	0.333	0.772	—	0.865	—	—	—	—	—

No JSON data available for plots.

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