SCN Proteipedia

Hg_chrom3_TN10mRNA_5855

Organism: Heterodera glycines Gene Locus: chr3:7845439-7846287 Feature type: polypeptide

Protein Sequence

Length: 174

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.936	0.668	0.731	0.595	1.054	0.737	0.342	1.149	0.766	1.553	1.306	1.352	2.554	1.326	1.056	1.396	0.754	0.784	0.884	0.338	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5562	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	49-69	0.991	23-54	0.998	—	—	0.000	—	—	0.191	0.716	0.271	0.312	0.139	0.053	0.113	0.036	0.070	0.174

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007897	1.000	1.000	Hsc_gene_20.t1	Hsc_gene_20.t1	—	P0C8L6.1 Probable pterin-4-alpha-carbinolamine dehydratase [Hypsibius exemplaris]	EXX71779.1 4a-hydroxytetrahydrobiopterin dehydratase [Rhizophagus irregularis DAOM 197198w];PKC16378.1 transcriptional coactivator/pterin dehydratase [Rhizophagus irregularis];GBC54228.1 pterin-4-alpha-carbinolamine dehydratase-like [Rhizophagus irregularis DAOM 181602=DAOM 197198];PKC75300.1 transcriptional coactivator/pterin dehydratase [Rhizophagus irregularis];PKK79721.1 transcriptional coactivator/pterin dehydratase [Rhizophagus irregularis]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006729\|GO:0008124	GO:0008150_0.884\|GO:0009987_0.825\|GO:0005575_0.740\|GO:0110165_0.740\|GO:0005622_0.693\|GO:0016020_0.663\|GO:0008152_0.651\|GO:0043226_0.646\|GO:0044238_0.642\|GO:0043229_0.641\|GO:0009058_0.635\|GO:0044237_0.635\|GO:0043227_0.618\|GO:0044249_0.617\|GO:0043231_0.604\|GO:0003674_0.602\|GO:0005737_0.551\|GO:0005488_0.550\|GO:0005515_0.521	IPR001533+71-171_75-170_77-168+\|IPR036428+72-173_76-171+	—	PF01329+77-168+Pterin_4_alpha_carbinolamine_dehydratase	G3DSA:3.30.1360.20:FF:000001+71-173+Pterin-4-alpha-carbinolamine_dehydratase_2	PTHR12599+71-171+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-174	1f93_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.837	19789.000	9.823	8.000	26.437	13.793	46.552	53.448	16.092	10.345	45.977

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightcyan	1830.896	2776.034	2319.475	1177.035	950.538	1261.252	1255.185	1886.609	955.880	2933.463	2085.928

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.489	-1.375	-0.869	-0.341	0.423	—	0.478	-0.445	—	—	—	—	—

No JSON data available for plots.

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