Hg_chrom3_TN10mRNA_5856
Organism: Heterodera glycines Gene Locus: chr3:7846367-7850497 Feature type: polypeptideProtein Sequence
Length: 686
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.763 | 0.915 | 1.034 | 0.653 | 1.288 | 1.719 | 0.33 | 1.458 | 1.296 | 1.556 | 0.861 | 1.372 | 1.579 | 0.364 | 1.249 | 0.875 | 0.813 | 1.193 | 0.673 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5563
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.772
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.256
|
0.080
|
0.017
|
0.527
|
0.131
|
0.632
|
0.447
|
0.025
|
0.209
|
0.202
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007898
|
1.000
|
1.000
|
Hsc_gene_21.t1
|
Hsc_gene_21.t1
|
— |
G5EFV8.2 Vacuolar protein sorting-associated protein 52 homolog [Caenorhabditis elegans]
|
KAI3420391.1 Vacuolar protein sorting-associated protein 52 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.955|GO:0009987_0.916|GO:0005575_0.910|GO:0110165_0.910|GO:0005622_0.845|GO:0005737_0.778|GO:0016020_0.715|GO:0051179_0.702|GO:0051234_0.696|GO:0006810_0.687|GO:0043226_0.663|GO:0071944_0.657|GO:0005886_0.646|GO:0043229_0.639|GO:0051641_0.634|GO:0043227_0.625|GO:0051649_0.616|GO:0046907_0.601|GO:0043231_0.586|GO:0032501_0.547|GO:0003674_0.536|GO:0005773_0.527|GO:0012505_0.510
|
IPR007258+2-684+|IPR048319+40-211+|IPR048361+228-560+
|
— |
PF04129+40-211+Vps52/Sac2_family,_coiled-coil|PF20655+228-560+Vps52,_C-terminal
|
— |
PTHR14190+2-684+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6
|
1.000
|
7-686
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
79645.500
|
6.428
|
-1.000
|
28.134
|
12.391
|
49.854
|
50.146
|
14.723
|
13.411
|
41.691
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkorange
|
1296.869
|
1840.806
|
1308.844
|
1338.793
|
1387.696
|
1151.875
|
1823.510
|
1326.653
|
1141.793
|
1000.638
|
1061.133
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.722
|
-0.596
|
0.141
|
— |
-0.254
|
0.672
|
— |
0.601
|
— | — | — | — | — |
No JSON data available for plots.