Hg_chrom3_TN10mRNA_5857
Organism: Heterodera glycines Gene Locus: chr3:7850809-7852243 Feature type: polypeptideProtein Sequence
Length: 351
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 1.06 | 1.14 | 0.589 | 0.475 | 0.95 | 0.746 | 0.997 | 0.57 | 1.348 | 1.209 | 0.503 | 2.137 | 0.931 | 0.756 | 1.506 | 0.841 | 1.166 | 1.315 | 0.754 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5564
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_22
|
— |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KKKK
|
— | — | — | — |
1-23
|
0.959
|
0.998
|
0.000
|
0.000
|
0.235
|
0.253
|
0.047
|
0.322
|
0.121
|
0.155
|
0.098
|
0.079
|
0.210
|
0.898
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007899
|
1.000
|
1.000
|
Hsc_gene_22.t1
|
Hsc_gene_22.t1
|
— |
Q75WF2.1 Plancitoxin-1 [Acanthaster planci]
|
KAI3420392.1 deoxyribonuclease II, lysosomal [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004531|GO:0006259
|
GO:0008150_0.933|GO:0003674_0.835|GO:0008152_0.776|GO:0044238_0.758|GO:0043170_0.740|GO:0006139_0.707|GO:0090304_0.695|GO:0006259_0.675|GO:0005575_0.670|GO:0110165_0.666|GO:0003824_0.619|GO:0016787_0.589|GO:0005622_0.574|GO:0016788_0.571|GO:0140640_0.564|GO:0004518_0.563|GO:0004519_0.559|GO:0004520_0.559|GO:0004536_0.559|GO:0140097_0.559|GO:0005737_0.536|GO:0016020_0.517
|
IPR004947+9-318_25-319+
|
— |
PF03265+25-319+Deoxyribonuclease_II
|
— |
PTHR10858+9-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-351
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.911
|
38935.370
|
9.417
|
12.500
|
22.792
|
13.960
|
46.724
|
53.276
|
13.675
|
9.117
|
54.416
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
1985.805
|
2047.533
|
1633.555
|
1274.801
|
1352.411
|
1183.180
|
1751.540
|
1673.356
|
4517.962
|
1205.782
|
2625.288
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.556
|
-0.821
|
-0.248
|
— |
-0.178
|
0.577
|
0.395
|
0.209
|
— | — | — | — | — |