Hg_chrom3_TN10mRNA_5859
Organism: Heterodera glycines Gene Locus: chr3:7856712-7857826 Feature type: polypeptideProtein Sequence
Length: 236
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 0.788 | 0.308 | 0.0 | 1.483 | 1.086 | 0.504 | 1.695 | 0.659 | 0.973 | 2.696 | 1.994 | 0.589 | 0.896 | 2.162 | 0.605 | 0.903 | 0.899 | 0.652 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5566
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm
|
— |
RRNKNKETRKRREER,RKRREERLVQKRKEL,RRMRVLRHLLKRYRDAKK,PKSKTETVGKRETVGPKKKKGGK
|
1-29
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.251
|
0.552
|
0.038
|
0.606
|
0.283
|
0.018
|
0.250
|
0.005
|
0.119
|
0.592
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007901
|
1.000
|
1.000
|
Hsc_gene_24.t1
|
Hsc_gene_24.t1
|
— |
O02639.1 Large ribosomal subunit protein eL19 [Caenorhabditis elegans]
|
KAI3420394.1 60S ribosomal protein L19 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0022625
|
GO:0005575_0.870|GO:0110165_0.868|GO:0005622_0.817|GO:0043226_0.751|GO:0043229_0.735|GO:0043228_0.704|GO:0043232_0.704|GO:0008150_0.627|GO:0005737_0.613|GO:0032991_0.557|GO:0003674_0.551|GO:0009987_0.503
|
IPR000196+8-120_43-120+|IPR035970+42-118+|IPR039547+44-163+
|
SM01416+8-120+
|
PF01280+43-120+Ribosomal_protein_L19e
|
G3DSA:1.10.1200.240:FF:000001+32-170+Ribosomal_protein_L19
|
PTHR10722+44-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
110-236
|
1.000
|
1-109
|
9cai_CR
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
27715.590
|
11.493
|
46.000
|
42.373
|
8.051
|
59.746
|
40.254
|
31.780
|
10.593
|
36.864
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
13638.191
|
6183.250
|
8437.296
|
15050.725
|
15730.636
|
13343.876
|
7350.799
|
4632.498
|
27766.505
|
12318.804
|
18939.247
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.220
|
1.146
|
0.943
|
— |
-0.222
|
-0.850
|
-1.634
|
0.810
|
1.068
|
— | — | — | — |
No JSON data available for plots.