Hg_chrom3_TN10mRNA_5860
Organism: Heterodera glycines Gene Locus: chr3:7858155-7859578 Feature type: polypeptideProtein Sequence
Length: 243
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.383 | 1.244 | 0.599 | 0.568 | 1.303 | 1.055 | 1.078 | 1.235 | 1.555 | 0.779 | 1.06 | 1.21 | 1.6 | 0.871 | 0.924 | 0.882 | 1.417 | 0.998 | 0.95 | 1.089 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5567
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKAIIDEGKGKKKEH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.357
|
0.250
|
0.022
|
0.469
|
0.287
|
0.380
|
0.362
|
0.013
|
0.394
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAH7718754.1 B9 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.902|GO:0110165_0.902|GO:0005622_0.829|GO:0016020_0.814|GO:0043226_0.792|GO:0043227_0.748|GO:0071944_0.720|GO:0005886_0.706|GO:0008150_0.663|GO:0032991_0.648|GO:0009987_0.606|GO:0098590_0.575|GO:0042995_0.571|GO:0120025_0.569|GO:0005929_0.552|GO:0030990_0.552
|
IPR010796+9-190_13-130_15-175+
|
— |
PF07162+15-175+Ciliary_basal_body-associated,_B9_protein
|
— |
PTHR12968+9-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
212-243
|
1.000
|
1-211
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
27448.160
|
7.760
|
4.000
|
25.103
|
13.169
|
49.383
|
50.617
|
13.992
|
11.111
|
48.560
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
223.433
|
225.660
|
252.479
|
118.177
|
58.514
|
88.534
|
57.797
|
98.374
|
112.526
|
555.799
|
365.825
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.070
|
-0.985
|
-1.045
|
0.612
|
-0.606
|
— |
-0.625
|
— | — | — | — | — |
No JSON data available for plots.