SCN Proteipedia

Hg_chrom3_TN10mRNA_5861

Organism: Heterodera glycines Gene Locus: chr3:7859821-7863657 Feature type: polypeptide

Protein Sequence

Length: 491

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.663	0.947	1.148	1.545	1.324	1.828	0.63	1.731	0.905	0.798	0.926	1.198	1.584	1.018	1.372	1.28	0.801	0.617	0.313	0.419	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5568	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	nucleus	—	PKRPR,MKKERK,KRPRTILNAPQRKAFK,RKAFKIAFDKGPKPSRKVR	—	—	—	—	—	—	0.000	—	—	0.849	0.141	0.006	0.430	0.063	0.040	0.046	0.010	0.072	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007902	1.000	1.000	Hsc_gene_25.t1	Hsc_gene_25.t1	—	Q21192.4 LIM/homeobox protein lim-6 [Caenorhabditis elegans]	KAH7718753.1 LIM homeobox transcription factor 1-beta [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.890\|GO:0032502_0.755\|GO:0009987_0.751\|GO:0048856_0.749\|GO:0032501_0.737\|GO:0007275_0.707\|GO:0048731_0.699\|GO:0003674_0.641\|GO:0005488_0.641\|GO:0065007_0.637\|GO:0050789_0.632\|GO:0050794_0.624\|GO:0005575_0.619\|GO:0110165_0.618\|GO:0007399_0.602\|GO:0005622_0.585\|GO:0030154_0.570\|GO:0048869_0.570\|GO:0048513_0.564\|GO:0043226_0.558\|GO:0043229_0.547\|GO:0008152_0.533\|GO:0019222_0.533\|GO:0031323_0.532\|GO:0044237_0.532\|GO:0043170_0.528\|GO:0060255_0.528\|GO:0009058_0.522\|GO:0009059_0.522\|GO:0010467_0.522\|GO:0044249_0.522\|GO:0022008_0.521\|GO:0044238_0.517\|GO:0080090_0.517\|GO:0009889_0.513\|GO:0031326_0.513\|GO:0010556_0.509\|GO:0010468_0.508\|GO:0006139_0.504\|GO:0016070_0.504\|GO:0090304_0.504\|GO:0003676_0.503\|GO:0032774_0.503\|GO:0034654_0.503\|GO:0097159_0.503\|GO:0141187_0.503	IPR001356+326-386_328-390_329-385_329-387+\|IPR001781+130-204_131-197_159-202_209-272_210-265_211-247_211-265+\|IPR009057+308-387+\|IPR017970+361-384+\|IPR050453+112-451+	SM00132+131-197_210-265+\|SM00389+328-390+	PF00046+329-385+Homeodomain\|PF00412+159-202_211-265+LIM_domain	G3DSA:1.10.10.60:FF:000448+327-386+LIM/homeobox_protein_Lhx4	PTHR24208+112-451+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;276-491	1.000	2-275	8ik5_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.651	55719.320	6.630	1.500	30.550	10.998	55.601	44.399	16.293	14.257	49.084

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	264.948	449.106	401.406	200.181	141.587	163.763	105.233	257.945	199.326	364.947	293.966

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.392	-1.303	-0.895	-0.533	—	-0.630	0.551	-1.154	—	—	—	—	—

No JSON data available for plots.

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