Hg_chrom3_TN10mRNA_5868
Organism: Heterodera glycines Gene Locus: chr3:7880229-7882207 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 0.847 | 1.178 | 0.14 | 1.147 | 1.35 | 0.819 | 1.417 | 1.26 | 1.258 | 0.613 | 1.667 | 1.125 | 0.545 | 1.57 | 1.215 | 0.531 | 0.859 | 0.311 | 1.072 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5575
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.556
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.862
|
0.222
|
0.015
|
0.492
|
0.090
|
0.050
|
0.054
|
0.008
|
0.039
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007907
|
1.000
|
1.000
|
Hsc_gene_30.t1
|
Hsc_gene_30.t1
|
— |
O44156.1 Proteasome subunit alpha type-1 [Caenorhabditis elegans]
|
KAI1718834.1 proteasome subunit domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0006511|GO:0019773|GO:0051603
|
GO:0005575_0.882|GO:0110165_0.872|GO:0005622_0.836|GO:0005737_0.749|GO:0043226_0.713|GO:0043229_0.699|GO:0016020_0.696|GO:0043227_0.624|GO:0043231_0.606|GO:0032991_0.595|GO:0008150_0.575|GO:1902494_0.517|GO:0140535_0.505
|
IPR000426+6-28+|IPR001353+29-214+|IPR023332+21-234+|IPR029055+2-234_4-240+|IPR035144+6-217+|IPR050115+4-215+
|
SM00948+6-28+
|
PF00227+29-214+Proteasome_subunit|PF10584+6-28+Proteasome_subunit_A_N-terminal_signature
|
G3DSA:3.60.20.10:FF:000016+2-234+Proteasome_subunit_alpha_type-6
|
PTHR11599+4-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
231-247
|
1.000
|
1-230
|
6tu3_T
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
27672.200
|
6.390
|
-0.500
|
27.935
|
10.931
|
48.583
|
51.417
|
14.575
|
13.360
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2820.922
|
1124.233
|
1752.883
|
3768.706
|
3895.566
|
2891.790
|
2241.169
|
2511.977
|
2763.933
|
3448.712
|
3155.235
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.412
|
1.608
|
1.213
|
— |
-0.415
|
-0.357
|
-0.305
|
— | — | — | — | — | — |
No JSON data available for plots.