Hg_chrom3_TN10mRNA_5869
Organism: Heterodera glycines Gene Locus: chr3:7882605-7884081 Feature type: polypeptideProtein Sequence
Length: 244
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.477 | 1.525 | 1.267 | 0.848 | 1.161 | 1.576 | 0.683 | 0.82 | 1.275 | 0.997 | 1.18 | 1.446 | 1.48 | 0.709 | 0.836 | 1.288 | 0.739 | 0.807 | 2.522 | 0.241 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5576
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.699
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.465
|
0.172
|
0.034
|
0.679
|
0.107
|
0.249
|
0.177
|
0.031
|
0.103
|
0.129
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007908
|
1.000
|
1.000
|
Hsc_gene_31.t1
|
Hsc_gene_31.t1
|
— |
O45551.2 Eukaryotic translation initiation factor 4E-1 [Caenorhabditis elegans]
|
KAI1730374.1 eukaryotic initiation factor 4E domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003743|GO:0006413
|
GO:0008150_0.889|GO:0005575_0.684|GO:0110165_0.663|GO:0005622_0.596|GO:0003674_0.589|GO:0005737_0.548|GO:0050896_0.536|GO:0009987_0.529|GO:0005488_0.520|GO:0043226_0.505
|
IPR001040+33-233_63-213+|IPR023398+27-239_31-229+
|
— |
PF01652+63-213+Eukaryotic_initiation_factor_4E
|
— |
PTHR11960+33-233+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-244
|
5t48_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
27919.460
|
5.411
|
-3.000
|
27.459
|
11.066
|
53.689
|
46.311
|
13.525
|
13.934
|
48.361
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
pink
|
2944.418
|
3021.440
|
2153.133
|
2888.328
|
3225.684
|
2936.566
|
2521.383
|
1901.710
|
2674.189
|
3883.095
|
3364.993
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.718
|
-0.202
|
0.532
|
0.127
|
-0.120
|
-0.210
|
-0.731
|
0.549
|
— | — | — | — | — |
No JSON data available for plots.