Hg_chrom3_TN10mRNA_5871
Organism: Heterodera glycines Gene Locus: chr3:7887147-7888641 Feature type: polypeptideProtein Sequence
Length: 295
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.985 | 0.709 | 0.493 | 1.169 | 1.412 | 0.695 | 0.807 | 1.356 | 0.904 | 1.328 | 2.054 | 1.595 | 1.13 | 0.782 | 1.73 | 0.775 | 0.556 | 0.668 | 0.0 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5578
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.491
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKGDCSTEFDRLIACLKKR,KKRLRLSIAAPMKVKRLKR,KRLRLSIAAPMKVKRLKRA,ASGEKRRKRKAKGPNPLSCKKKKKSGEGKKDGNAGKVPGAFGRKRANGKGKA
|
46-86
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.899
|
0.151
|
0.011
|
0.162
|
0.150
|
0.012
|
0.041
|
0.003
|
0.037
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007910
|
1.000
|
1.000
|
Hsc_gene_34.t1
|
Hsc_gene_34.t1
|
— |
Q9BRU9.2 rRNA-processing protein UTP23 homolog [Homo sapiens]
|
KAI1718830.1 fcf1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032040
|
GO:0008150_0.713|GO:0005575_0.683|GO:0110165_0.683|GO:0009987_0.675|GO:0005622_0.651|GO:0043226_0.619|GO:0043229_0.615|GO:0016020_0.608|GO:0003674_0.599|GO:0071840_0.562|GO:0043227_0.552|GO:0043231_0.540|GO:0008152_0.509|GO:0009058_0.509|GO:0043170_0.504|GO:0009059_0.503|GO:0044237_0.503|GO:0044249_0.503|GO:0044238_0.502
|
IPR006984+113-213+|IPR029060+86-214+
|
— |
PF04900+113-213+Fcf1
|
G3DSA:3.40.50.1010:FF:000006+63-221+rRNA-processing_protein_UTP23_homolog
|
PTHR12416+63-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
205-295
|
1.000
|
1-204
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
33426.270
|
10.659
|
36.000
|
35.932
|
8.475
|
50.508
|
49.492
|
24.746
|
11.186
|
41.695
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1947.317
|
723.566
|
1350.613
|
1451.176
|
1466.967
|
1467.434
|
1366.573
|
1356.423
|
5136.849
|
1223.342
|
2900.559
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
0.867
|
0.212
|
— | — | — | — | — |
1.964
|
-1.681
|
— | — | — |
No JSON data available for plots.