Hg_chrom3_TN10mRNA_5874
Organism: Heterodera glycines Gene Locus: chr3:7893962-7894867 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.608 | 0.946 | 0.951 | 0.401 | 0.872 | 0.894 | 1.661 | 1.163 | 1.163 | 0.55 | 1.321 | 2.394 | 1.776 | 0.671 | 0.831 | 0.997 | 1.048 | 1.145 | 0.447 | 0.513 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5581
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.251
|
0.586
|
0.101
|
0.602
|
0.236
|
0.133
|
0.056
|
0.461
|
0.249
|
0.452
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007913
|
1.000
|
1.000
|
Hsc_gene_37.t1
|
Hsc_gene_37.t1
|
— |
P52011.1 Peptidyl-prolyl cis-trans isomerase 3 [Caenorhabditis elegans]
|
KAI3420375.1 Peptidyl-prolyl cis-trans isomerase 3 [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755|GO:0006457
|
GO:0005575_0.814|GO:0110165_0.799|GO:0005622_0.681|GO:0005737_0.632|GO:0016020_0.568|GO:0003674_0.566|GO:0008150_0.556|GO:0043226_0.535|GO:0043229_0.529|GO:0043227_0.514
|
IPR002130+7-169_7-170_24-39_60-72_103-118_118-130_131-146+|IPR020892+55-72+|IPR024936+1-172+|IPR029000+1-172_2-171+
|
— |
PF00160+7-169+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
G3DSA:2.40.100.10:FF:000002+1-172+Peptidyl-prolyl_cis-trans_isomerase
|
PTHR11071+2-171+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-172
|
4jcp_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.937
|
18615.180
|
9.457
|
6.000
|
25.581
|
11.047
|
46.512
|
53.488
|
15.116
|
10.465
|
54.070
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
9351.167
|
4561.835
|
6893.008
|
11823.335
|
14557.364
|
12715.823
|
7494.301
|
9529.137
|
4774.529
|
11989.909
|
8897.603
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.366
|
1.237
|
0.887
|
0.268
|
— |
-0.752
|
-0.523
|
— |
-1.429
|
— | — | — | — |
No JSON data available for plots.