Hg_chrom3_TN10mRNA_5875
Organism: Heterodera glycines Gene Locus: chr3:7895545-7898400 Feature type: polypeptideProtein Sequence
Length: 548
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.658 | 1.528 | 0.863 | 1.258 | 1.034 | 0.749 | 0.695 | 1.004 | 0.892 | 0.937 | 1.189 | 1.073 | 1.571 | 0.912 | 0.931 | 1.33 | 1.077 | 0.885 | 1.404 | 0.966 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5582
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
PQKK,KKIRTLQKKLDDISKLKTK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.455
|
0.082
|
0.003
|
0.637
|
0.161
|
0.092
|
0.157
|
0.012
|
0.106
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007914
|
1.000
|
1.000
|
Hsc_gene_38.t1
|
Hsc_gene_38.t1
|
— |
Q19052.2 Eukaryotic translation initiation factor 2A [Caenorhabditis elegans]
|
KAF7634921.1 eIF2A domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003743|GO:0005515|GO:0006413
|
GO:0008150_0.863|GO:0009987_0.816|GO:0005575_0.677|GO:0110165_0.677|GO:0008152_0.670|GO:0043170_0.670|GO:0009058_0.658|GO:0044237_0.649|GO:0065007_0.646|GO:0009059_0.643|GO:0044249_0.643|GO:0050789_0.639|GO:0010467_0.631|GO:0050794_0.617|GO:0005622_0.609|GO:0019222_0.532|GO:0031323_0.525|GO:0060255_0.521|GO:0009889_0.507|GO:0031326_0.507|GO:0010468_0.502|GO:0010556_0.502
|
IPR011387+6-542+|IPR013979+220-415+|IPR015943+10-160_220-441+
|
— |
PF08662+220-415+Eukaryotic_translation_initiation_factor_eIF2A
|
— |
PTHR13227+6-542+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
430-548
|
1.000
|
1-429
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
61815.990
|
8.231
|
13.500
|
25.365
|
12.774
|
50.730
|
49.270
|
14.416
|
10.949
|
52.920
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
paleturquoise
|
2362.063
|
3050.978
|
1703.023
|
2595.026
|
2887.768
|
2413.149
|
2495.403
|
1856.692
|
2760.032
|
1888.236
|
2261.863
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.071
|
-0.371
|
0.716
|
0.122
|
-0.244
|
— |
-0.479
|
0.567
|
— | — | — | — | — |
No JSON data available for plots.