Hg_chrom3_TN10mRNA_5876

Organism: Heterodera glycines    Gene Locus: chr3:7899087-7915721    Feature type: polypeptide

Protein Sequence

Length: 1,713
FASTA 



  
  

    

      
        

          COMPOSITION
          
            Ala
          
            Asn
          
            Asp
          
            Cys
          
            Glu
          
            Gln
          
            Gly
          
            His
          
            Ile
          
            Leu
          
            Lys
          
            Met
          
            Phe
          
            Pro
          
            Arg
          
            Ser
          
            Thr
          
            Val
          
            Trp
          
            Tyr
          
            Xaa
          
        

      
      
        
ABUNDANCE
          
            
            
              0.821
              
            
            
          
            
            
              0.842
              
            
            
          
            
            
              0.647
              
            
            
          
            
            
              0.423
              
            
            
          
            
            
              1.177
              
            
            
          
            
            
              1.108
              
            
            
          
            
            
              0.778
              
            
            
          
            
            
              1.255
              
            
            
          
            
            
              0.869
              
            
            
          
            
            
              1.112
              
            
            
          
            
            
              0.796
              
            
            
          
            
            
              1.511
              
            
            
          
            
            
              1.2
              
            
            
          
            
            
              1.347
              
            
            
          
            
            
              1.62
              
            
            
          
            
            
              1.418
              
            
            
          
            
            
              0.861
              
            
            
          
            
            
              0.849
              
            
            
          
            
            
              1.257
              
            
            
          
            
            
              0.721
              
            
            
          
            
            
              0.0
              
            
            
          
        

      
    

  

  







  
No JSON data available for plots.



















Features


   TSV







    

      
        

            GENOMICS
          
            Gene Name
          
            Nested Gene
          
            (host gene)
          
            Average
          
            TN7
          
            TN8
          
            TN10
          
            TN20
          
            TN22
          
            MM26
          
            OP50
          
            PA3
          
            X12
          
        

      
      
        

          
            
              
Hg_chrom3_TN10gene_5583

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.778

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
                —
              
            
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
                —
              
            
          
        

      
    

  




    

      
        

            EFFECTORS
          
            SCN putative
          
            SCN known (N)
          
            SCN known (P)
          
            BCN known
          
            BCN putative
          
            Effector Islands
          
            Cluster Name
          
            (score)
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
25-Eggs_Female

            		
          
            
              
1.000

            		
          
        

      
    

  




    

      
        

            SECRETION
          
            Secretion
          
            DL-signals
          
            DL-localization
          
            Localizer
          
            L-nucleus
          
            L-mitochondria
          
            (score)
          
            L-chloroplast
          
            (score)
          
            Signal Peptide
          
            (score_v5)
          
            (score_v6)
          
            (TM_v5)
          
            (TM_v6)
          
            nucleus
          
            mitochondrion
          
            plastid
          
            cytoplasm
          
            endoplasmic_reticulum
          
            lysosome_vacuole
          
            golgi_apparatus
          
            peroxisome
          
            peroxisome
          
            extracellular
          
        

      
      
        

          
            
              
not_secreted

            		
          
            
              
signal_peptide|transmembrane_domain

            		
          
            
              
cell_membrane

            		
          
            
              
                —
              
            
          
            
              
KKKR,RKSK,RRKRR,RKRPFLMFASLSAEKRREK,KRPFLMFASLSAEKRREKR,KRMPNATQGKSVGRKKRPS,EKRREKRKAEKRKRMPNATQGKSVGRKKRP

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.000

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.080

            		
          
            
              
0.125

            		
          
            
              
0.030

            		
          
            
              
0.177

            		
          
            
              
0.417

            		
          
            
              
0.338

            		
          
            
              
0.293

            		
          
            
              
0.028

            		
          
            
              
0.824

            		
          
            
              
0.036

            		
          
        

      
    

  




    

      
        

            HOMOLOGY
          
            Orthogroup
          
            (SCN counts)
          
            (BCN counts)
          
            (BCN genes)
          
            BCN hits
          
            C. elegans hits
          
            SP best hit
          
            NR best hit
          
            HGT Donor
          
            HGT Index
          
        

      
      
        

          
            
              
OG0007915

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
Hsc_gene_39.t1

            		
          
            
              
Hsc_gene_39.t1

            		
          
            
              
                —
              
            
          
            
              
Q11069.2 Transmembrane channel-like protein 2 [Caenorhabditis elegans]

            		
          
            
              
XP_024503332.1 TMC family-containing protein [Strongyloides ratti];CEF64131.1 TMC family-containing protein [Strongyloides ratti]

            		
          
            
              
No

            		
          
            
              
0.000

            		
          
        

      
    

  




    

      
        

            FUNCTIONAL
          
            TF
          
            GO terms
          
            DeepGoPlus
          
            InterPro
          
            SMART
          
            Pfam
          
            FunFam
          
            Panther
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
GO:0005886|GO:0016020

            		
          
            
              
GO:0008150_0.960|GO:0005575_0.783|GO:0110165_0.783|GO:0032501_0.764|GO:0016020_0.757|GO:0009987_0.719|GO:0071944_0.711|GO:0005886_0.706|GO:0050896_0.705|GO:0003008_0.647|GO:0043226_0.608|GO:0003674_0.607|GO:0050877_0.600|GO:0007600_0.580|GO:0051179_0.571|GO:0006810_0.557|GO:0051234_0.557|GO:0051606_0.518|GO:0050906_0.512

            		
          
            
              
IPR012496+776-891+|IPR038900+76-1095+

            		
          
            
              
                —
              
            
          
            
              
PF07810+776-891+TMC_domain

            		
          
            
              
                —
              
            
          
            
              
PTHR23302+76-1095+

            		
          
        

      
    

  




    

      
        

            SEQUENCE
          
            Protein Sequence
          
        

      
      
        

          
            
              
                —
              
            
          
        

      
    

  




    

      
        

            STRUCTURE
          
            Disorder
          
            (regions)
          
            Ordered
          
            (regions)
          
            PDB
          
            (hit type)
          
        

      
      
        

          
            
              
regions

            		
          
            
              
1-195;631-704;1066-1473;1523-1713

            		
          
            
              
3.000

            		
          
            
              
196-630;705-1065;1474-1522

            		
          
            
              
8tkp_D

            		
          
            
              
PARTIAL_DOMAIN

            		
          
        

      
    

  




    

      
        

            BIOPHYSICS
          
            Inclusion Body
          
            Mol weight
          
            pI
          
            Net Charge
          
            Charged
          
            Aromatic
          
            Polar
          
            Non-polar
          
            Basic
          
            Acidic
          
            Small
          
        

      
      
        

          
            
              
0.925

            		
          
            
              
192389.550

            		
          
            
              
9.813

            		
          
            
              
65.500

            		
          
            
              
26.328

            		
          
            
              
10.917

            		
          
            
              
49.445

            		
          
            
              
50.555

            		
          
            
              
15.703

            		
          
            
              
10.625

            		
          
            
              
49.796

            		
          
        

      
    

  




    

      
        

            EXPRESSION
          
            Bin13
          
            Bin38
          
            Average
          
            Egg
          
            ppJ2
          
            pJ2
          
            J3
          
            J4
          
            Female
          
            Male
          
            Gland (J2)
          
            Gland (J3)
          
            Gland (J2+J3)
          
        

      
      
        

          
            
              
black

            		
          
            
              
turquoise

            		
          
            
              
750.045

            		
          
            
              
1879.328

            		
          
            
              
841.583

            		
          
            
              
331.668

            		
          
            
              
191.086

            		
          
            
              
250.671

            		
          
            
              
627.728

            		
          
            
              
348.401

            		
          
            
              
79.341

            		
          
            
              
1545.518

            		
          
            
              
917.156

            		
          
        

      
    

  




    

      
        

            DGE
          
            Egg vs ppJ2
          
            Egg vs pJ2
          
            ppJ2 vs pJ2
          
            pJ2 vs J3
          
            J3 vs J4
          
            J4 vs F
          
            J4 vs M
          
            F vs M
          
            G(J3 vs J2)
          
            G(J2) vs pJ2
          
            G(J3) vs J3
          
            G(J2) lines
          
            G(J3) lines
          
        

      
      
        

          
            
              
-1.389

            		
          
            
              
-2.639

            		
          
            
              
-1.234

            		
          
            
              
-0.827

            		
          
            
              
0.406

            		
          
            
              
1.334

            		
          
            
              
0.369

            		
          
            
              
0.992

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
        

      
    

  











  
No JSON data available for plots.









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