SCN Proteipedia

Hg_chrom3_TN10mRNA_5877

Organism: Heterodera glycines Gene Locus: chr3:7927880-7929536 Feature type: polypeptide

Protein Sequence

Length: 344

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.946	1.082	0.74	0.702	1.066	2.013	1.073	0.727	0.452	1.218	0.705	2.052	0.807	1.621	1.009	1.744	0.62	0.484	0.0	0.513	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5584	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.919

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	5-25	0.996	—	—	0.000	—	—	0.876	0.078	0.011	0.344	0.046	0.038	0.062	0.023	0.061	0.130

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007916	1.000	1.000	Hsc_gene_41.t1	Hsc_gene_41.t1	—	Q21836.1 Homeobox ARX homolog alr-1 [Caenorhabditis elegans]	EDO31796.1 predicted protein, partial [Nematostella vectensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0008150_0.923\|GO:0009987_0.874\|GO:0065007_0.812\|GO:0050789_0.804\|GO:0050794_0.794\|GO:0005575_0.778\|GO:0110165_0.749\|GO:0003674_0.734\|GO:0005488_0.734\|GO:0032502_0.734\|GO:0048856_0.734\|GO:0032501_0.709\|GO:0005622_0.678\|GO:0003676_0.657\|GO:0097159_0.657\|GO:0008152_0.648\|GO:0019222_0.648\|GO:0031323_0.648\|GO:0043226_0.648\|GO:0044237_0.648\|GO:0043229_0.639\|GO:0007275_0.636\|GO:0043170_0.632\|GO:0060255_0.632\|GO:0009058_0.630\|GO:0009059_0.630\|GO:0010467_0.630\|GO:0044249_0.630\|GO:0044238_0.625\|GO:0080090_0.625\|GO:0009889_0.623\|GO:0031326_0.623\|GO:0010468_0.616\|GO:0010556_0.616\|GO:0006139_0.613\|GO:0016070_0.613\|GO:0032774_0.613\|GO:0034654_0.613\|GO:0090304_0.613\|GO:0141187_0.613\|GO:0019219_0.604\|GO:0051252_0.604\|GO:0016020_0.601\|GO:0003677_0.599\|GO:0043565_0.599\|GO:0006351_0.592\|GO:0006355_0.592\|GO:2001141_0.592\|GO:0003690_0.591\|GO:1990837_0.591\|GO:0000976_0.557\|GO:0001067_0.557\|GO:0048518_0.548\|GO:0048522_0.545\|GO:0043227_0.536\|GO:0043231_0.519\|GO:0009893_0.515\|GO:0031325_0.511\|GO:0010604_0.508\|GO:0048731_0.507	IPR001356+312-344_315-344+\|IPR009057+302-344+\|IPR050649+190-344+	—	PF00046+315-344+Homeodomain	—	PTHR24329+190-344+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	160-344	1.000	1-159	3a01_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.933	36831.140	6.346	-0.500	21.512	6.105	50.000	50.000	11.047	10.465	55.523

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	126.633	200.819	246.442	79.073	26.839	45.633	109.209	67.184	193.897	117.897	150.468

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.482	-1.531	-1.590	0.779	1.269	—	0.840	—	—	—	—	—

No JSON data available for plots.

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