SCN Proteipedia

Hg_chrom3_TN10mRNA_5884

Organism: Heterodera glycines Gene Locus: chr3:7953064-7956421 Feature type: polypeptide

Protein Sequence

Length: 566

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.986	1.602	0.771	0.366	1.09	1.812	0.652	1.59	0.393	0.74	0.99	2.286	1.276	1.359	1.118	1.666	0.753	0.642	0.544	0.312	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5591	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.828

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKKR,HKRAKKKRVREK,KREKVERKEKQQREEKK,KKKRVREKSVDNNEQKKCR,KKRVREKSVDNNEQKKCRA,KRVREKSVDNNEQKKCRAR	—	—	—	—	—	—	0.000	—	—	0.946	0.130	0.006	0.249	0.041	0.018	0.011	0.003	0.038	0.014

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007919	1.000	1.000	Hsc_gene_46.t1	Hsc_gene_46.t1;Hsc_gene_46.t2	—	Q10666.3 Protein pop-1 [Caenorhabditis elegans]	KAI3420365.1 HMG [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016055	GO:0008150_0.913\|GO:0005575_0.853\|GO:0110165_0.835\|GO:0005622_0.808\|GO:0009987_0.798\|GO:0043226_0.783\|GO:0043229_0.776\|GO:0065007_0.776\|GO:0050789_0.773\|GO:0003674_0.764\|GO:0005488_0.764\|GO:0050794_0.764\|GO:0016020_0.755\|GO:0032501_0.743\|GO:0032502_0.743\|GO:0048856_0.742\|GO:0007275_0.711\|GO:0008152_0.700\|GO:0019222_0.700\|GO:0031323_0.700\|GO:0044237_0.700\|GO:0043227_0.696\|GO:0044238_0.693\|GO:0080090_0.693\|GO:0043170_0.692\|GO:0060255_0.692\|GO:0009058_0.677\|GO:0009059_0.677\|GO:0010467_0.677\|GO:0044249_0.677\|GO:0009889_0.675\|GO:0010468_0.675\|GO:0010556_0.675\|GO:0031326_0.675\|GO:0003676_0.671\|GO:0097159_0.671\|GO:0006139_0.667\|GO:0016070_0.667\|GO:0043231_0.667\|GO:0090304_0.667\|GO:0032774_0.666\|GO:0034654_0.666\|GO:0141187_0.666\|GO:0048731_0.661\|GO:0005634_0.660\|GO:0019219_0.656\|GO:0051252_0.650\|GO:0006351_0.641\|GO:0006355_0.640\|GO:2001141_0.640\|GO:0003677_0.621\|GO:0006366_0.609\|GO:0006357_0.604\|GO:0043565_0.599\|GO:0048513_0.593\|GO:0030154_0.591\|GO:0048869_0.591\|GO:0048519_0.580\|GO:0048523_0.557\|GO:0048518_0.548\|GO:0003690_0.540\|GO:1990837_0.540\|GO:0048522_0.539\|GO:0050896_0.522	IPR009071+229-301_230-300+\|IPR024940+89-471+\|IPR036910+228-319_229-310+	SM00398+229-301+\|SM01366+326-356+	PF00505+230-300+HMG_(high_mobility_group)_box	—	PTHR10373+89-471+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-77;130-566	1.000	78-129	2lef_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.944	62700.730	9.099	16.000	25.972	9.541	56.184	43.816	15.194	10.777	53.710

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	1231.890	1144.137	964.863	1678.875	1686.937	1884.450	2085.177	1122.622	133.971	1326.394	815.356

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.475	0.416	0.908	—	0.175	0.156	-0.853	1.036	-3.433	—	—	—	—

No JSON data available for plots.

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