Hg_chrom3_TN10mRNA_5885
Organism: Heterodera glycines Gene Locus: chr3:7961865-7963896 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.593 | 0.856 | 0.927 | 1.075 | 1.228 | 1.453 | 0.742 | 1.7 | 0.818 | 1.723 | 0.472 | 1.166 | 1.574 | 0.981 | 1.503 | 0.769 | 1.022 | 0.687 | 0.654 | 1.083 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5592
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.580
|
0.205
|
0.021
|
0.653
|
0.095
|
0.232
|
0.163
|
0.090
|
0.127
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007920
|
1.000
|
1.000
|
Hsc_gene_47.t1
|
Hsc_gene_47.t1
|
— |
Q27883.1 S-adenosylmethionine decarboxylase proenzyme [Onchocerca volvulus]
|
KAI1730825.1 adenosylmethionine decarboxylase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004014|GO:0006597|GO:0008295
|
GO:0008150_0.870|GO:0003674_0.701|GO:0008152_0.655|GO:0009058_0.544|GO:0006576_0.521|GO:0006595_0.521|GO:0009308_0.521|GO:0003824_0.502
|
IPR001985+10-353_24-350+|IPR016067+22-347+|IPR018166+80-90+|IPR048283+21-349_22-347+
|
— |
PF01536+22-347+Adenosylmethionine_decarboxylase
|
— |
PTHR11570+21-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-353
|
3h0w_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.503
|
40596.220
|
6.362
|
-1.000
|
26.346
|
13.598
|
47.309
|
52.691
|
13.881
|
12.465
|
44.476
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
1334.527
|
379.827
|
1278.811
|
1136.225
|
1071.804
|
1010.654
|
1558.377
|
2617.692
|
47.518
|
2407.894
|
1396.304
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.522
|
1.444
|
— | — | — |
0.635
|
1.270
|
-0.606
|
-5.787
|
4.782
|
— | — | — |
No JSON data available for plots.