Hg_chrom3_TN10mRNA_5886
Organism: Heterodera glycines Gene Locus: chr3:7969623-7972789 Feature type: polypeptideProtein Sequence
Length: 553
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.652 | 1.178 | 0.658 | 0.312 | 1.206 | 0.742 | 0.603 | 1.175 | 1.206 | 1.613 | 1.041 | 1.489 | 1.859 | 1.043 | 1.476 | 1.214 | 0.652 | 0.795 | 0.974 | 0.638 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5593
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.951
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-21
|
0.999
|
16-83
|
0.991
|
— | — |
0.007
|
— | — |
0.169
|
0.902
|
0.085
|
0.266
|
0.174
|
0.097
|
0.099
|
0.134
|
0.100
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001970
|
3.000
|
1.000
|
Hsc_gene_48.t1
|
Hsc_gene_48.t1
|
— |
Q5SNQ7.1 Protein SERAC1 [Danio rerio]
|
KAI1730826.1 PGAP1-like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0005575_0.919|GO:0110165_0.916|GO:0009987_0.890|GO:0071944_0.706|GO:0005622_0.607|GO:0016020_0.581|GO:0043226_0.570|GO:0043229_0.556|GO:0005737_0.552|GO:0043227_0.520|GO:0043231_0.505
|
IPR016024+175-284+|IPR029058+302-478_308-438+|IPR052374+286-538+
|
— | — | — |
PTHR48182+286-538+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-553
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
63459.420
|
10.082
|
24.500
|
27.306
|
12.477
|
47.740
|
52.260
|
16.456
|
10.850
|
43.400
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
407.242
|
103.523
|
109.506
|
80.175
|
81.543
|
73.696
|
106.028
|
179.861
|
605.011
|
1052.552
|
860.749
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.506
|
-0.339
|
— | — |
0.537
|
1.182
|
-0.617
|
— | — |
-3.192
|
— | — |
No JSON data available for plots.