Hg_chrom3_TN10mRNA_5888
Organism: Heterodera glycines Gene Locus: chr3:7975305-7975988 Feature type: polypeptideProtein Sequence
Length: 108
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 0.431 | 1.01 | 0.319 | 1.08 | 0.475 | 1.543 | 0.463 | 1.852 | 0.751 | 1.543 | 1.634 | 0.772 | 1.068 | 0.756 | 0.661 | 1.063 | 1.403 | 0.712 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5595
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.334
|
0.720
|
0.221
|
0.597
|
0.167
|
0.218
|
0.121
|
0.185
|
0.144
|
0.475
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003629
|
2.000
|
1.000
|
Hsc_gene_50.t1
|
Hsc_gene_50.t1
|
— |
P48375.2 Peptidyl-prolyl cis-trans isomerase Fkbp12 [Drosophila melanogaster]
|
KAI3420358.1 Peptidyl-prolyl cis-trans isomerase fkbp1a [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003755
|
GO:0005575_0.850|GO:0110165_0.847|GO:0008150_0.720|GO:0016020_0.672|GO:0005622_0.646|GO:0003674_0.643|GO:0005737_0.629|GO:0009987_0.605|GO:0043226_0.569|GO:0043229_0.547|GO:0050896_0.513
|
IPR001179+17-105_20-108+|IPR046357+2-108+|IPR050689+5-108+
|
— |
PF00254+17-105+FKBP-type_peptidyl-prolyl_cis-trans_isomerase
|
G3DSA:3.10.50.40:FF:000025+1-108+Peptidylprolyl_isomerase
|
PTHR10516+5-108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-108
|
7dki_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
11593.440
|
8.909
|
2.500
|
26.852
|
7.407
|
41.667
|
58.333
|
14.815
|
12.037
|
53.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
139.673
|
5.735
|
14.310
|
27.158
|
37.831
|
37.701
|
148.263
|
165.485
|
139.202
|
342.988
|
255.651
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.094
|
2.106
|
1.030
|
— | — |
1.987
|
2.030
|
— | — | — |
-3.063
|
— | — |
No JSON data available for plots.