SCN Proteipedia

Hg_chrom3_TN10mRNA_5891

Organism: Heterodera glycines Gene Locus: chr3:8019272-8022568 Feature type: polypeptide

Protein Sequence

Length: 573

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.832	0.649	0.793	1.023	1.629	1.387	0.81	1.047	1.008	1.156	0.925	1.745	1.357	0.873	1.389	0.798	0.715	1.031	0.94	0.667	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5598	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.958

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKAISRLEEERRKREKA,KKMQVKLDESLPEAKRTKI,KPSKSAMKKAISRLEEERRKREK	—	—	—	—	—	—	0.000	—	—	0.448	0.303	0.063	0.650	0.210	0.095	0.085	0.016	0.136	0.092

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007921	1.000	1.000	Hsc_gene_53.t1	Hsc_gene_53.t1	—	Q19722.1 Asparagine--tRNA ligase, cytoplasmic [Caenorhabditis elegans]	KAF7634935.1 AA_TRNA_LIGASE_II domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0003676\|GO:0004812\|GO:0004816\|GO:0005524\|GO:0006418\|GO:0006421	GO:0005575_0.853\|GO:0110165_0.848\|GO:0005622_0.785\|GO:0008150_0.728\|GO:0005737_0.699\|GO:0009987_0.608\|GO:0016020_0.580\|GO:0043226_0.552	IPR002312+315-327_331-344_488-504_528-542+\|IPR004364+245-566+\|IPR004365+147-227+\|IPR004522+137-571+\|IPR006195+265-565+\|IPR012340+112-231_116-232+\|IPR045864+237-573_244-567+\|IPR048952+24-129+	—	PF00152+245-566+tRNA_synthetases_class_II_(D,_K_and_N)\|PF01336+147-227+OB-fold_nucleic_acid_binding_domain\|PF20917+24-129+Asparaginal-tRNA_synthetase,_N-terminal_domain	G3DSA:3.30.930.10:FF:000040+238-573+Asparagine--tRNA_ligase,_cytoplasmic	PTHR22594+91-572+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	48-127	2.000	1-47;128-573	8h53_D	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.517	65007.410	6.380	-1.000	29.145	10.471	47.295	52.705	15.009	14.136	45.375

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	lightcyan	1594.637	1297.143	1673.759	2112.667	2279.314	1952.168	2335.714	1573.436	1331.222	1019.044	1152.834

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.139	0.567	0.444	—	-0.208	0.270	-0.415	0.712	—	—	—	—	—

No JSON data available for plots.

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