Hg_chrom3_TN10mRNA_5892
Organism: Heterodera glycines Gene Locus: chr3:8022770-8025686 Feature type: polypeptideProtein Sequence
Length: 796
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.687 | 1.315 | 0.845 | 0.26 | 1.11 | 1.482 | 0.419 | 0.691 | 1.173 | 0.968 | 1.18 | 1.921 | 0.977 | 2.247 | 1.077 | 1.256 | 1.236 | 0.704 | 0.0 | 0.222 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5599
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,PKPS,KRQKKPTSLLKRKTN,RKKTDTEGQNDGKRQKKP,RKSFTQKQIQVTTQKTKKE,KKETAETQQQNGNETARKK,KRKTNTTDELEQTNERKQK,RKTNTTDELEQTNERKQKL,KRHSRRSKINRGKQFPLRFPKPMKALSRKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.858
|
0.081
|
0.018
|
0.460
|
0.046
|
0.013
|
0.032
|
0.045
|
0.049
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007922
|
1.000
|
1.000
|
Hsc_gene_54.t1
|
Hsc_gene_54.t1;Hsc_gene_54.t2
|
— | — |
XP_001896575.2 hrp36.1, putative [Brugia malayi];VIO95859.1 hrp36.1, putative [Brugia malayi]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-306;368-796
|
1.000
|
307-367
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.938
|
88295.640
|
9.772
|
19.500
|
25.754
|
5.653
|
53.518
|
46.482
|
14.447
|
11.307
|
53.141
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkorange
|
972.063
|
564.526
|
578.795
|
510.562
|
573.640
|
711.952
|
2246.205
|
585.227
|
413.076
|
1778.878
|
1193.534
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.194
|
-0.282
|
— |
0.137
|
0.325
|
1.669
|
-0.387
|
2.083
|
— | — | — | — | — |
No JSON data available for plots.