Hg_chrom3_TN10mRNA_5893
Organism: Heterodera glycines Gene Locus: chr3:8026907-8029311 Feature type: polypeptideProtein Sequence
Length: 363
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.929 | 1.217 | 0.952 | 0.855 | 1.194 | 1.13 | 0.361 | 0.826 | 1.286 | 1.712 | 1.085 | 1.458 | 1.148 | 0.742 | 1.237 | 1.141 | 0.994 | 0.668 | 0.0 | 0.648 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5600
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.741
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KMGIKKKKSILRRALPRRNS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.598
|
0.168
|
0.007
|
0.737
|
0.086
|
0.124
|
0.098
|
0.015
|
0.364
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007923
|
1.000
|
1.000
|
Hsc_gene_55.t1
|
Hsc_gene_55.t1
|
— |
P39960.1 GTPase-activating protein BEM2/IPL2 [Saccharomyces cerevisiae S288C]
|
KAI1729826.1 rhoGAP domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
GO:0008150_0.935|GO:0005575_0.868|GO:0009987_0.862|GO:0110165_0.860|GO:0065007_0.835|GO:0050789_0.794|GO:0005622_0.765|GO:0050794_0.752|GO:0003674_0.695|GO:0005488_0.665|GO:0005737_0.642|GO:0016020_0.626|GO:0005515_0.612|GO:0050896_0.610|GO:0051716_0.588|GO:0007154_0.582|GO:0023052_0.580|GO:0043226_0.573|GO:0043229_0.556|GO:0007165_0.537|GO:0035556_0.503|GO:0071840_0.501
|
IPR000198+26-232_40-229_47-198+|IPR008936+16-245_41-234+
|
SM00324+40-229+
|
PF00620+47-198+RhoGAP_domain
|
— |
PTHR14963+35-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
326-363
|
1.000
|
1-325
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
40959.170
|
8.033
|
6.000
|
27.273
|
7.989
|
50.964
|
49.036
|
14.876
|
12.397
|
46.281
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
steelblue
|
981.447
|
588.296
|
663.104
|
721.514
|
907.612
|
639.495
|
1207.070
|
665.159
|
980.027
|
1536.718
|
1298.136
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.158
|
0.230
|
0.299
|
-0.491
|
0.926
|
— |
1.001
|
— | — | — | — | — |
No JSON data available for plots.