Hg_chrom3_TN10mRNA_5894
Organism: Heterodera glycines Gene Locus: chr3:8029410-8032044 Feature type: polypeptideProtein Sequence
Length: 520
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.626 | 1.208 | 0.979 | 0.199 | 1.058 | 0.69 | 0.778 | 1.442 | 1.239 | 1.04 | 0.758 | 0.566 | 1.656 | 1.072 | 1.06 | 1.291 | 0.757 | 1.078 | 3.254 | 1.188 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5601
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — | — |
0.960
|
0.215
|
0.000
|
— |
0.226
|
0.262
|
0.047
|
0.378
|
0.318
|
0.333
|
0.263
|
0.324
|
0.276
|
0.602
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003631
|
1.000
|
2.000
|
Hsc_gene_56.t1;Hsc_gene_56.t2
|
Hsc_gene_56.t1;Hsc_gene_56.t2
|
— |
P49713.2 Putative alpha-L-fucosidase [Caenorhabditis elegans]
|
KAI1730400.1 alpha-L-fucosidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004560|GO:0005975|GO:0006004
|
GO:0003674_0.871|GO:0008150_0.831|GO:0003824_0.779|GO:0016787_0.699|GO:0005575_0.687|GO:0110165_0.687|GO:0016798_0.659|GO:0004553_0.657|GO:0015928_0.650|GO:0016020_0.626|GO:0005622_0.592|GO:0005737_0.583|GO:0008152_0.575|GO:0043226_0.569|GO:0044238_0.556|GO:0043229_0.543|GO:0043227_0.540|GO:0004560_0.539|GO:0043231_0.531
|
IPR000933+19-348_19-411_22-415+|IPR016286+14-475_75-90_114-130_133-151_160-179_198-214_226-247_301-322_334-356+|IPR017853+20-351+|IPR018526+266-277+
|
SM00812+19-411+
|
PF01120+19-348+Alpha-L-fucosidase
|
G3DSA:3.20.20.80:FF:000027+16-355+Alpha-L-fucosidase
|
PTHR10030+22-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
471-520
|
1.000
|
1-470
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
59775.340
|
6.455
|
-0.500
|
24.808
|
17.115
|
46.346
|
53.654
|
13.077
|
11.731
|
49.423
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
4393.299
|
3165.551
|
13385.112
|
1574.755
|
2135.810
|
2185.735
|
10839.592
|
7172.342
|
4332.292
|
799.379
|
2313.485
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.852
|
-1.145
|
-2.980
|
0.408
|
— |
2.321
|
1.609
|
0.739
|
— | — | — | — | — |