Hg_chrom3_TN10mRNA_5895
Organism: Heterodera glycines Gene Locus: chr3:8035406-8038629 Feature type: polypeptideProtein Sequence
Length: 532
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.634 | 1.311 | 0.615 | 0.972 | 0.846 | 0.964 | 0.582 | 1.316 | 1.546 | 1.245 | 0.911 | 1.106 | 1.775 | 1.048 | 1.611 | 1.316 | 0.709 | 0.911 | 1.012 | 0.498 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5602
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKFGQNILSARNRKL,KKYAPPVDGNGNRRRTKS,RKFAFCFKFPRPQIHRGKR
|
41-62
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.271
|
0.222
|
0.039
|
0.554
|
0.162
|
0.460
|
0.393
|
0.019
|
0.324
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007924
|
1.000
|
1.000
|
Hsc_gene_57.t1
|
Hsc_gene_57.t1
|
— | — |
KAF7634937.1 UDENN domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085
|
GO:0005575_0.789|GO:0110165_0.786|GO:0008150_0.742|GO:0003674_0.718|GO:0005622_0.688|GO:0009987_0.642|GO:0005488_0.629|GO:0005515_0.580|GO:0016020_0.539
|
IPR001194+187-364_249-335+|IPR037516+88-504+|IPR040032+125-481+|IPR043153+246-437+
|
SM00799+187-364+
|
PF02141+249-335+DENN_(AEX-3)_domain
|
— |
PTHR13196+125-481+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-532
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
60635.190
|
10.288
|
36.000
|
25.000
|
12.030
|
47.932
|
52.068
|
16.541
|
8.459
|
47.180
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
1303.004
|
2828.121
|
1282.313
|
1397.274
|
1340.485
|
1377.487
|
1416.454
|
1494.075
|
620.065
|
1059.515
|
871.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.371
|
-1.154
|
0.233
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.