Hg_chrom3_TN10mRNA_5896
Organism: Heterodera glycines Gene Locus: chr3:8039380-8040083 Feature type: polypeptideProtein Sequence
Length: 51
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.368 | 1.368 | 0.0 | 0.0 | 0.0 | 0.503 | 0.233 | 2.941 | 1.307 | 1.06 | 2.674 | 2.307 | 0.545 | 0.754 | 3.601 | 0.0 | 0.964 | 0.297 | 3.017 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5603
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.713
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKLAKAAKQNRPLPHWVRMKTGNRIRYNAKRRHWRRTKLKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.649
|
0.144
|
0.035
|
0.331
|
0.380
|
0.033
|
0.099
|
0.003
|
0.123
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007925
|
1.000
|
1.000
|
Hsc_gene_22358.t1
|
Hsc_gene_22358.t1
|
— |
Q6F482.1 Large ribosomal subunit protein eL39 [Plutella xylostella]
|
KAI1714579.1 ribosomal l39 protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.805|GO:0110165_0.798|GO:0005622_0.661|GO:0043226_0.644|GO:0043229_0.644|GO:0003674_0.597|GO:0008150_0.576|GO:0043228_0.535|GO:0043232_0.535|GO:0005737_0.518|GO:0005840_0.505
|
IPR000077+1-51_9-50+|IPR020083+30-46+|IPR023626+1-51_3-50+
|
— |
PF00832+9-50+Ribosomal_L39_protein
|
G3DSA:1.10.1620.10:FF:000001+1-51+60S_ribosomal_protein-like_L39
|
PTHR19970+1-50+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-51
|
0.000
|
— |
7oya_l1
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6276.620
|
13.058
|
19.500
|
41.176
|
13.725
|
54.902
|
45.098
|
41.176
|
0.000
|
31.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
1693.190
|
830.798
|
1564.864
|
2162.425
|
2085.502
|
1804.874
|
1210.369
|
954.548
|
2658.818
|
1433.577
|
1958.680
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
1.243
|
0.577
|
— |
-0.193
|
-0.566
|
-1.024
|
0.486
|
— | — | — | — | — |
No JSON data available for plots.