Hg_chrom3_TN10mRNA_5898
Organism: Heterodera glycines Gene Locus: chr3:8050485-8054202 Feature type: polypeptideProtein Sequence
Length: 387
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 0.841 | 1.597 | 0.0 | 1.292 | 0.398 | 0.984 | 0.904 | 0.574 | 0.629 | 0.313 | 1.216 | 1.22 | 1.093 | 3.059 | 1.587 | 0.508 | 0.509 | 2.783 | 1.064 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5605
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.728
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.464
|
0.282
|
0.025
|
0.557
|
0.061
|
0.076
|
0.025
|
0.048
|
0.374
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007927
|
1.000
|
1.000
|
Hsc_gene_60.t1
|
Hsc_gene_60.t1;Hsc_gene_60.t2
|
— |
P34696.1 Heat shock protein Hsp-16.1/Hsp-16.11 [Caenorhabditis elegans]
|
KAF7634895.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.865|GO:0005575_0.779|GO:0110165_0.773|GO:0005622_0.721|GO:0009987_0.681|GO:0003674_0.635|GO:0050896_0.603|GO:0005737_0.600|GO:0065007_0.550|GO:0050789_0.538|GO:0005488_0.515|GO:0008152_0.510
|
IPR001436+20-207_114-134_136-149_151-170_173-194_202-217+|IPR002068+102-210_113-207+|IPR008978+99-216_108-207+
|
— |
PF00011+113-207+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+20-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
178-387
|
1.000
|
1-177
|
3l1g_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
44954.140
|
8.953
|
5.500
|
35.401
|
13.437
|
54.780
|
45.220
|
18.863
|
16.537
|
50.904
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
8217.244
|
3318.530
|
17311.633
|
8227.514
|
5421.481
|
14015.886
|
6605.114
|
34482.879
|
1235.947
|
1504.845
|
1389.603
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.156
|
1.173
|
-0.966
|
-0.633
|
1.386
|
-1.077
|
1.213
|
-2.250
|
— |
2.920
|
— | — | — |
No JSON data available for plots.