Hg_chrom3_TN10mRNA_5899
Organism: Heterodera glycines Gene Locus: chr3:8054962-8057089 Feature type: polypeptideProtein Sequence
Length: 487
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.525 | 1.194 | 1.157 | 0.425 | 2.122 | 1.264 | 1.027 | 1.232 | 0.593 | 0.971 | 1.089 | 1.087 | 1.141 | 1.303 | 0.964 | 1.291 | 0.774 | 0.622 | 0.632 | 0.242 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5606
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,LGEV,KKVPEGTNIHRKPKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.878
|
0.070
|
0.017
|
0.343
|
0.081
|
0.058
|
0.130
|
0.030
|
0.038
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007928
|
1.000
|
1.000
|
Hsc_gene_61.t1
|
Hsc_gene_61.t1;Hsc_gene_62.t1
|
— |
Q93591.2 Uncharacterized protein F26A3.7 [Caenorhabditis elegans]
|
XP_045091521.1 Protein CBG00310 [Caenorhabditis briggsae];CAP21745.2 Protein CBG00310 [Caenorhabditis briggsae]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR022226+345-451+|IPR046331+142-487+
|
— |
PF12572+345-451+Protein_of_unknown_function_(DUF3752)
|
— |
PTHR46370+142-487+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-487
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.536
|
54119.330
|
4.521
|
-29.000
|
33.470
|
8.214
|
57.290
|
42.710
|
14.374
|
19.097
|
50.513
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1620.166
|
3074.637
|
1207.981
|
1308.384
|
1457.386
|
1212.561
|
2045.511
|
1234.878
|
2112.976
|
1175.494
|
1577.272
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.579
|
-1.370
|
0.225
|
0.124
|
-0.251
|
0.765
|
— |
0.869
|
— | — | — | — | — |
No JSON data available for plots.