Hg_chrom3_TN10mRNA_5901
Organism: Heterodera glycines Gene Locus: chr3:8062011-8064751 Feature type: polypeptideProtein Sequence
Length: 430
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 1.136 | 1.142 | 0.962 | 0.581 | 0.835 | 0.886 | 1.047 | 0.879 | 1.571 | 0.458 | 1.642 | 1.292 | 0.939 | 1.566 | 1.096 | 0.61 | 1.374 | 1.073 | 0.205 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5608
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum|lysosome_vacuole
|
— |
LGEV,KVRGAKGRRREWARRR
|
— | — |
9-40
|
0.911
|
— | — |
0.000
|
— | — |
0.263
|
0.081
|
0.018
|
0.251
|
0.651
|
0.607
|
0.621
|
0.016
|
0.225
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003632
|
2.000
|
1.000
|
Hsc_gene_64.t1
|
Hsc_gene_64.t1
|
— | — |
KAI1718815.1 methyltransferase-like protein 13 [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.766|GO:0110165_0.762|GO:0008150_0.702|GO:0005622_0.627|GO:0003674_0.623|GO:0005737_0.593|GO:0008152_0.522
|
IPR029063+176-416_222-381+
|
— |
PF01564+226-352+Spermine/spermidine_synthase_domain
|
— |
PTHR43317+223-391+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-430
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
47103.330
|
8.092
|
8.500
|
22.558
|
8.837
|
42.093
|
57.907
|
12.791
|
9.767
|
55.349
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
560.231
|
1058.885
|
976.432
|
809.801
|
653.018
|
648.968
|
790.942
|
742.763
|
368.963
|
43.985
|
183.261
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.346
|
-0.524
|
-0.162
|
-0.343
|
— |
0.295
|
— |
0.233
|
— | — |
4.184
|
— | — |
No JSON data available for plots.