Hg_chrom3_TN10mRNA_5902
Organism: Heterodera glycines Gene Locus: chr3:8065026-8069860 Feature type: polypeptideProtein Sequence
Length: 1,183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 1.337 | 1.045 | 0.67 | 1.183 | 0.975 | 0.403 | 1.226 | 1.259 | 1.656 | 0.948 | 1.84 | 1.432 | 0.829 | 1.19 | 1.256 | 0.734 | 0.884 | 0.78 | 0.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5609
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRKK,PILKRKI,KKQPKADGRHRRRGKGKSGPSAS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.914
|
0.032
|
0.011
|
0.250
|
0.016
|
0.056
|
0.065
|
0.041
|
0.059
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007930
|
1.000
|
1.000
|
Hsc_gene_65.t1
|
Hsc_gene_65.t1
|
— |
B4NP05.1 Integrator complex subunit 3 homolog [Drosophila willistoni]
|
KAI3420336.1 Integrator complex subunit 3 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.941|GO:0110165_0.941|GO:0016020_0.892|GO:0005622_0.883|GO:0043226_0.850|GO:0043229_0.824|GO:0043227_0.788|GO:0005737_0.768|GO:0043231_0.759|GO:0008150_0.643|GO:0009987_0.608|GO:0065007_0.555|GO:0050789_0.528|GO:0050794_0.506
|
IPR019333+90-499+|IPR045334+41-1046+
|
— |
PF10189+90-499+Integrator_complex_subunit_3_N-terminal
|
— |
PTHR13587+41-1046+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;588-700;1132-1183
|
2.000
|
2-587;701-1131
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
134631.900
|
6.818
|
5.500
|
27.388
|
9.806
|
50.211
|
49.789
|
14.539
|
12.849
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
2367.522
|
3417.772
|
2285.082
|
2152.257
|
2251.614
|
2254.499
|
2050.974
|
2968.983
|
1830.970
|
2466.740
|
2194.267
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.810
|
-0.804
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.