Hg_chrom3_TN10mRNA_5903
Organism: Heterodera glycines Gene Locus: chr3:8071246-8073659 Feature type: polypeptideProtein Sequence
Length: 362
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 1.156 | 1.005 | 0.381 | 2.44 | 1.346 | 0.395 | 0.691 | 0.614 | 1.643 | 1.8 | 1.462 | 0.384 | 0.159 | 1.522 | 1.263 | 0.453 | 0.837 | 0.212 | 0.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5610
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.665
|
0.099
|
0.015
|
0.626
|
0.097
|
0.095
|
0.292
|
0.015
|
0.055
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007931
|
1.000
|
1.000
|
Hsc_gene_66.t1
|
Hsc_gene_66.t1
|
— |
Q8N3L3.3 Beta-taxilin [Homo sapiens]
|
KAI1713800.1 myosin-like coiled-coil protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019905
|
GO:0005575_0.853|GO:0110165_0.848|GO:0005622_0.844|GO:0005737_0.721|GO:0008150_0.636|GO:0016020_0.632|GO:0009987_0.612|GO:0043226_0.549|GO:0043229_0.542
|
IPR026183+22-348_24-336+
|
— |
PF09728+24-336+Myosin-like_coiled-coil_protein
|
— |
PTHR16127+22-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-125;326-362
|
1.000
|
126-325
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.513
|
41735.200
|
6.402
|
-0.500
|
40.884
|
4.144
|
62.707
|
37.293
|
20.718
|
20.166
|
39.227
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
orange
|
2166.175
|
1172.377
|
2380.574
|
1502.724
|
1307.265
|
1779.438
|
1303.821
|
3980.280
|
3587.959
|
1751.117
|
2538.335
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
0.221
|
-0.555
|
-0.233
|
0.459
|
-0.438
|
1.057
|
-1.467
|
— | — | — | — | — |
No JSON data available for plots.