Hg_chrom3_TN10mRNA_5906
Organism: Heterodera glycines Gene Locus: chr3:8078226-8081704 Feature type: polypeptideProtein Sequence
Length: 724
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.546 | 1.767 | 0.904 | 0.619 | 1.657 | 0.779 | 0.707 | 0.829 | 1.351 | 1.848 | 1.025 | 1.381 | 0.998 | 0.505 | 0.958 | 1.204 | 1.019 | 0.586 | 0.744 | 0.325 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5613
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KGPK
|
— | — | — | — |
1-23
|
0.909
|
0.999
|
1.000
|
1.000
|
0.175
|
0.041
|
0.030
|
0.295
|
0.324
|
0.486
|
0.344
|
0.102
|
0.826
|
0.295
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007933
|
1.000
|
1.000
|
Hsc_gene_69.t1
|
— | — | — |
KAI1717534.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.655|GO:0110165_0.650|GO:0008150_0.617|GO:0071944_0.511
|
IPR001611+174-233_323-381+|IPR003591+172-195_197-219_220-244_296-319_320-343_344-367_368-391_418-441+|IPR032675+57-281_282-563+|IPR050328+9-329+
|
SM00369+172-195_197-219_220-244_296-319_320-343_344-367_368-391_418-441+
|
PF13855+174-233_323-381+Leucine_rich_repeat
|
— |
PTHR24373+9-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
683-724
|
1.000
|
1-682
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
81329.410
|
4.895
|
-19.000
|
28.039
|
7.320
|
53.315
|
46.685
|
13.122
|
14.917
|
46.133
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
537.456
|
686.108
|
544.824
|
141.865
|
531.159
|
1232.767
|
113.217
|
340.685
|
77.192
|
946.989
|
574.219
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.564
|
-2.411
|
-1.831
|
1.873
|
1.230
|
-3.437
|
-1.967
|
-1.447
|
-3.719
|
— | — | — | — |