Hg_chrom3_TN10mRNA_5907
Organism: Heterodera glycines Gene Locus: chr3:8081835-8082948 Feature type: polypeptideProtein Sequence
Length: 236
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.788 | 1.182 | 0.616 | 0.877 | 1.483 | 0.978 | 0.807 | 1.059 | 0.659 | 1.718 | 0.899 | 1.246 | 1.412 | 1.141 | 1.557 | 0.605 | 0.486 | 1.605 | 0.0 | 0.125 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5614
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKGKKGPVVGKEGKEKGERPSHRRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.362
|
0.213
|
0.007
|
0.573
|
0.128
|
0.377
|
0.237
|
0.001
|
0.373
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007934
|
1.000
|
1.000
|
Hsc_gene_70.t1
|
— | — |
Q15311.3 RalA-binding protein 1 [Homo sapiens]
|
KAH7698179.1 RalA-binding protein 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0007165|GO:0007264|GO:0031267
|
GO:0008150_0.856|GO:0005575_0.848|GO:0110165_0.838|GO:0009987_0.773|GO:0005622_0.762|GO:0065007_0.749|GO:0003674_0.665|GO:0050789_0.654|GO:0050794_0.631|GO:0005488_0.625|GO:0005515_0.601|GO:0050896_0.555|GO:0005737_0.529|GO:0023052_0.508|GO:0051716_0.508|GO:0007154_0.503
|
IPR000198+35-236_50-226_53-194+|IPR008936+27-219_32-210+|IPR039767+30-211+
|
SM00324+50-226+
|
PF00620+53-194+RhoGAP_domain
|
— |
PTHR12783+30-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-236
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
26321.640
|
8.257
|
5.500
|
27.966
|
7.627
|
44.068
|
55.932
|
15.678
|
12.288
|
48.305
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
248.688
|
581.003
|
337.738
|
278.163
|
284.519
|
295.416
|
254.604
|
226.186
|
168.341
|
115.143
|
137.942
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.013
|
-1.200
|
-0.171
|
— | — | — |
-0.492
|
0.315
|
— | — | — | — | — |
No JSON data available for plots.