Hg_chrom3_TN10mRNA_5908
Organism: Heterodera glycines Gene Locus: chr3:8083141-8084580 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.633 | 0.724 | 1.203 | 1.073 | 1.427 | 1.397 | 0.324 | 0.973 | 1.038 | 1.315 | 1.002 | 1.373 | 1.513 | 1.122 | 1.112 | 1.001 | 0.765 | 1.061 | 1.497 | 0.687 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5615
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.805
|
0.043
|
0.039
|
0.402
|
0.047
|
0.046
|
0.086
|
0.015
|
0.038
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007935
|
1.000
|
1.000
|
Hsc_gene_71.t1
|
Hsc_gene_71.t1
|
— | — |
KAI1731580.1 survival motor neuron (SMN) interacting protein 1 (SIP1) domain-containing protein [Ditylenchus destructor]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000245|GO:0000387|GO:0005681
|
GO:0005575_0.911|GO:0110165_0.909|GO:0005622_0.862|GO:0016020_0.843|GO:0043226_0.801|GO:0005737_0.796|GO:0043229_0.780|GO:0043227_0.774|GO:0043231_0.751|GO:0005634_0.629|GO:0008150_0.619|GO:0009987_0.573|GO:0065007_0.562|GO:0003674_0.515
|
IPR017364+2-257+|IPR035426+18-251+
|
— |
PF04938+18-251+Survival_motor_neuron_(SMN)_interacting_protein_1_(SIP1)
|
— |
PTHR12794+5-255+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-257
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.653
|
29759.040
|
5.077
|
-5.500
|
29.183
|
11.673
|
49.416
|
50.584
|
14.008
|
15.175
|
45.525
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
515.834
|
583.876
|
476.764
|
555.100
|
673.362
|
453.653
|
833.374
|
429.410
|
552.554
|
340.280
|
431.255
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.524
|
-0.210
|
0.330
|
0.247
|
-0.555
|
0.888
|
— |
1.100
|
— | — | — | — | — |
No JSON data available for plots.