Hg_chrom3_TN10mRNA_5912
Organism: Heterodera glycines Gene Locus: chr3:8091210-8098395 Feature type: polypeptideProtein Sequence
Length: 1,424
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.906 | 1.535 | 0.715 | 0.46 | 0.878 | 1.891 | 0.652 | 0.948 | 0.968 | 0.902 | 0.841 | 1.281 | 0.839 | 1.323 | 1.061 | 1.615 | 1.128 | 1.0 | 0.324 | 0.372 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5618
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS,KKNVAKRSNERKEKV,KERKARGGEKRNKDK,RKEKVQPTVGGKRGRP,RRKWHEYVSDLEQQKKRKG,RKWHEYVSDLEQQKKRKGG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.895
|
0.054
|
0.015
|
0.304
|
0.064
|
0.025
|
0.042
|
0.024
|
0.075
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003634
|
2.000
|
1.000
|
Hsc_gene_77.t1
|
Hsc_gene_77.t1
|
— |
Q8TEK3.3 Histone-lysine N-methyltransferase, H3 lysine-79 specific [Homo sapiens]
|
KAI1709276.1 histone methylation protein DOT1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0031151|GO:0051726
|
GO:0005575_0.948|GO:0110165_0.942|GO:0005622_0.896|GO:0016020_0.869|GO:0043226_0.849|GO:0043229_0.822|GO:0008150_0.790|GO:0043227_0.777|GO:0009987_0.750|GO:0043231_0.740|GO:0065007_0.736|GO:0050789_0.725|GO:0003674_0.685|GO:0005634_0.682|GO:0050794_0.660|GO:0071840_0.638|GO:0016043_0.635|GO:0008152_0.621|GO:0043170_0.621|GO:0044238_0.601|GO:0006139_0.583|GO:0090304_0.573|GO:0048518_0.566|GO:0019222_0.564|GO:0032991_0.561|GO:0048522_0.560|GO:0031323_0.551|GO:0044237_0.551|GO:0009058_0.540|GO:0009059_0.540|GO:0044249_0.540|GO:0060255_0.540|GO:0010467_0.537|GO:0009889_0.527|GO:0031326_0.527|GO:0010556_0.523|GO:0009893_0.522|GO:0010468_0.522|GO:0003824_0.516|GO:0140096_0.516|GO:0010604_0.511|GO:0031325_0.511|GO:0006996_0.508|GO:0006325_0.507|GO:0006338_0.507|GO:0031974_0.506|GO:0031981_0.506|GO:0043233_0.506|GO:0070013_0.506
|
IPR025789+59-381_161-368+|IPR029063+128-379_172-395+|IPR030445+107-885+
|
— |
PF08123+161-368+Histone_methylation_protein_DOT1
|
G3DSA:3.40.50.150:FF:000033+172-394+Histone-lysine_N-methyltransferase,_H3_lysine-79_specific
|
PTHR21451+107-885+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-35;380-770;971-1424
|
2.000
|
36-379;771-970
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.941
|
154991.820
|
9.283
|
35.500
|
21.840
|
6.601
|
54.003
|
45.997
|
12.640
|
9.199
|
56.812
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2643.897
|
8234.625
|
2614.672
|
2012.919
|
2114.933
|
2237.301
|
2491.518
|
2909.618
|
1392.715
|
2041.669
|
1763.545
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.884
|
-2.170
|
-0.269
|
— | — |
0.165
|
— | — | — | — | — | — | — |
No JSON data available for plots.