SCN Proteipedia

Hg_chrom3_TN10mRNA_5914

Organism: Heterodera glycines Gene Locus: chr3:8114738-8120242 Feature type: polypeptide

Protein Sequence

Length: 773

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.993	1.384	1.011	0.758	0.69	1.227	1.109	1.358	0.719	1.066	0.627	1.902	0.827	1.169	0.898	1.515	0.87	0.96	0.896	0.419	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5620	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.930	0.053	0.004	0.349	0.033	0.052	0.035	0.013	0.036	0.017

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007939	1.000	1.000	Hsc_gene_80.t1	Hsc_gene_80.t1	—	Q04725.2 Transducin-like enhancer protein 2 [Homo sapiens]	KAI1730839.1 protein groucho-2 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005634\|GO:0006355	GO:0008150_0.912\|GO:0005575_0.808\|GO:0110165_0.807\|GO:0009987_0.798\|GO:0065007_0.775\|GO:0050789_0.767\|GO:0005622_0.735\|GO:0050794_0.707\|GO:0016020_0.695\|GO:0043226_0.664\|GO:0043229_0.648\|GO:0008152_0.637\|GO:0043227_0.618\|GO:0019222_0.615\|GO:0043231_0.602\|GO:0044238_0.574\|GO:0003674_0.569\|GO:0031323_0.566\|GO:0044237_0.566\|GO:0032502_0.565\|GO:0048856_0.565\|GO:0009058_0.562\|GO:0080090_0.550\|GO:0044249_0.545\|GO:0005634_0.535\|GO:0009889_0.535\|GO:0031326_0.535\|GO:0043170_0.526\|GO:0005488_0.525\|GO:0048519_0.514\|GO:0009059_0.504\|GO:0060255_0.502	IPR001680+451-488_460-488_523-563_525-563_566-605_579-605_608-647_611-647_615-656_690-729_694-728_697-728_733-770_742-769+\|IPR005617+36-149+\|IPR009146+31-360_672-694_695-713_714-733_734-753_754-773+\|IPR015943+413-773+\|IPR036322+448-770+	SM00320+451-488_523-563_566-605_608-647_690-729_733-770+	PF00400+460-488_525-563_579-605_611-647_694-728_742-769+WD_domain,_G-beta_repeat\|PF03920+36-149+Groucho/TLE_N-terminal_Q-rich_domain	G3DSA:2.130.10.10:FF:001072+414-773+Transcription_factor_unc-37	PTHR10814+31-360+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-37;152-461	2.000	38-151;462-773	5mwj_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.887	82507.480	6.612	1.500	20.957	8.279	47.607	52.393	11.255	9.702	59.897

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	3696.362	12961.450	4171.654	2903.469	3136.100	2766.918	3937.754	4034.047	955.373	2738.281	1974.178

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.865	-2.296	-0.414	—	-0.166	0.519	0.445	—	—	1.764	—	—	—

No JSON data available for plots.

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