Hg_chrom3_TN10mRNA_5915
Organism: Heterodera glycines Gene Locus: chr3:8120442-8126825 Feature type: polypeptideProtein Sequence
Length: 1,215
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.11 | 0.88 | 0.883 | 0.88 | 1.07 | 1.034 | 0.607 | 1.193 | 1.244 | 2.002 | 0.574 | 0.775 | 1.417 | 0.776 | 1.394 | 1.093 | 0.621 | 0.923 | 0.696 | 0.412 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5621
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.529
|
0.135
|
0.018
|
0.577
|
0.222
|
0.174
|
0.165
|
0.132
|
0.155
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007940
|
1.000
|
1.000
|
Hsc_gene_81.t1
|
Hsc_gene_81.t1
|
— |
Q8BYA0.1 Tubulin-specific chaperone D [Mus musculus]
|
KAF7634087.1 TFCD_C domain-containing [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0007021|GO:0007023|GO:0048487
|
GO:0008150_0.958|GO:0009987_0.913|GO:0005575_0.775|GO:0110165_0.773|GO:0007017_0.659|GO:0016043_0.633|GO:0071840_0.633|GO:0003674_0.585|GO:0005622_0.581|GO:0006996_0.563|GO:0007010_0.542|GO:0000226_0.535|GO:0008152_0.519
|
IPR011989+367-555_561-1193+|IPR016024+380-1063_1033-1189+|IPR022577+913-1100+|IPR033162+18-1195+
|
— |
PF12612+913-1100+Tubulin_folding_cofactor_D_C_terminal
|
— |
PTHR12658+18-1195+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1215
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
135176.290
|
6.867
|
6.500
|
24.280
|
9.794
|
43.539
|
56.461
|
13.004
|
11.276
|
47.407
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1959.550
|
3905.056
|
3012.251
|
2265.082
|
1860.485
|
1834.525
|
2575.617
|
1934.551
|
857.620
|
1409.478
|
1172.967
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.605
|
-0.923
|
-0.302
|
-0.316
|
— |
0.499
|
— |
0.555
|
— | — | — | — | — |
No JSON data available for plots.