Hg_chrom3_TN10mRNA_5916
Organism: Heterodera glycines Gene Locus: chr3:8127309-8129968 Feature type: polypeptideProtein Sequence
Length: 329
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.778 | 0.565 | 1.216 | 2.935 | 1.317 | 1.169 | 0.688 | 1.368 | 0.675 | 1.52 | 0.967 | 0.894 | 0.929 | 0.701 | 1.055 | 1.129 | 0.747 | 0.783 | 0.234 | 0.715 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5622
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
RLWKRRQ
|
1-21
|
0.999
|
— | — | — | — |
0.001
|
— | — |
0.219
|
0.059
|
0.009
|
0.234
|
0.486
|
0.641
|
0.551
|
0.046
|
0.505
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007941
|
1.000
|
1.000
|
Hsc_gene_82.t4
|
Hsc_gene_82.t1;Hsc_gene_82.t4
|
— |
P51559.3 Endoprotease bli-4 [Caenorhabditis elegans]
|
KAI3420322.1 putative oxidoreductase bli-4, mitochondrial [Globodera pallida]
|
No
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.927|GO:0110165_0.927|GO:0008150_0.908|GO:0009987_0.867|GO:0065007_0.812|GO:0050789_0.731|GO:0032501_0.689|GO:0016020_0.669|GO:0050794_0.663|GO:0032502_0.660|GO:0048856_0.660|GO:0005622_0.651|GO:0007275_0.639|GO:0050896_0.633|GO:0048731_0.620|GO:0051716_0.608|GO:0043226_0.581|GO:0048518_0.577|GO:0043229_0.568|GO:0048522_0.561|GO:0071944_0.556|GO:0043227_0.554|GO:0043231_0.538
|
IPR006212+69-121_147-193_152-191+|IPR009030+55-206+
|
SM00261+69-121_147-193+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
264-329
|
1.000
|
1-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
36574.760
|
5.442
|
-5.500
|
28.875
|
8.815
|
48.328
|
51.672
|
14.286
|
14.590
|
51.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1075.864
|
1384.275
|
950.722
|
822.272
|
1183.158
|
2402.798
|
1239.718
|
1906.937
|
540.259
|
593.005
|
570.399
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.771
|
-0.889
|
— |
0.493
|
1.038
|
-0.945
|
-0.436
|
-0.480
|
— | — | — | — | — |
No JSON data available for plots.