Hg_chrom3_TN10mRNA_5919
Organism: Heterodera glycines Gene Locus: chr3:8147140-8147608 Feature type: polypeptideProtein Sequence
Length: 137
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.103 | 0.34 | 1.194 | 0.755 | 0.608 | 0.561 | 0.782 | 1.46 | 0.649 | 0.592 | 0.553 | 2.147 | 2.433 | 0.842 | 1.788 | 1.981 | 0.598 | 1.548 | 0.561 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5625
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.775
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
5-44
|
0.942
|
20-42
|
0.992
|
— | — |
0.000
|
— | — |
0.074
|
0.917
|
0.164
|
0.289
|
0.033
|
0.084
|
0.229
|
0.034
|
0.027
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007943
|
1.000
|
1.000
|
Hsc_gene_84.t1
|
Hsc_gene_84.t1
|
— |
Q53S33.1 BolA-like protein 3 [Homo sapiens]
|
XP_027229673.1 bolA-like protein 3 [Penaeus vannamei]
|
No
|
-0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.882|GO:0110165_0.875|GO:0005622_0.792|GO:0016020_0.774|GO:0005737_0.755|GO:0043226_0.748|GO:0043229_0.744|GO:0043227_0.720|GO:0043231_0.713|GO:0008150_0.596
|
IPR002634+71-129+|IPR036065+45-130_50-130+|IPR052275+55-130+
|
— |
PF01722+71-129+BolA-like_protein
|
— |
PTHR46188+55-130+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
118-137
|
1.000
|
1-117
|
2ncl_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
14993.040
|
8.810
|
5.000
|
25.547
|
12.409
|
46.715
|
53.285
|
15.328
|
10.219
|
58.394
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
steelblue
|
635.967
|
622.803
|
654.107
|
834.142
|
811.173
|
588.523
|
742.460
|
370.611
|
579.989
|
613.433
|
599.100
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.159
|
0.284
|
0.460
|
— |
-0.448
|
0.346
|
-0.774
|
1.147
|
— | — | — | — | — |
No JSON data available for plots.