SCN Proteipedia

Hg_chrom3_TN10mRNA_5920

Organism: Heterodera glycines Gene Locus: chr3:8147848-8151465 Feature type: polypeptide

Protein Sequence

Length: 830

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.037	0.981	0.942	0.706	0.924	1.205	0.76	1.145	0.696	1.14	0.511	1.701	2.209	0.904	1.18	1.033	0.77	0.913	2.132	1.099	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5626	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.993

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	cytoplasm\|endoplasmic_reticulum	—	—	60-109	0.960	—	—	—	—	0.000	—	—	0.146	0.281	0.085	0.549	0.620	0.306	0.581	0.099	0.317	0.235

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007944	1.000	1.000	Hsc_gene_85.t1	Hsc_gene_85.t1	—	Q9HCG7.2 Non-lysosomal glucosylceramidase [Homo sapiens]	KAI1730786.1 glycosyl-hydrolase family, catalytic region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004348\|GO:0004553\|GO:0005975\|GO:0006680\|GO:0016020	GO:0008150_0.954\|GO:0003674_0.894\|GO:0009987_0.884\|GO:0005575_0.872\|GO:0110165_0.872\|GO:0003824_0.826\|GO:0008152_0.817\|GO:0044238_0.782\|GO:0016020_0.778\|GO:0044237_0.774\|GO:0005622_0.761\|GO:0071944_0.744\|GO:0005737_0.743\|GO:0005886_0.724\|GO:0044281_0.719\|GO:0043226_0.713\|GO:0009056_0.708\|GO:0016787_0.708\|GO:1901135_0.708\|GO:0006629_0.693\|GO:0043229_0.691\|GO:0044248_0.687\|GO:1901615_0.686\|GO:0043227_0.685\|GO:0044255_0.685\|GO:0016042_0.676\|GO:0043231_0.675\|GO:0008202_0.674\|GO:0043603_0.674\|GO:0044242_0.674\|GO:0006643_0.670\|GO:0006664_0.670\|GO:0006665_0.670\|GO:0006672_0.670\|GO:0006677_0.670\|GO:0006678_0.670\|GO:0006680_0.670\|GO:0006687_0.670\|GO:0019377_0.670\|GO:0030149_0.670\|GO:0046466_0.670\|GO:0046477_0.670\|GO:0046479_0.670\|GO:0046514_0.670\|GO:1901136_0.670\|GO:1903509_0.670\|GO:0004553_0.660\|GO:0016798_0.660\|GO:0004348_0.650\|GO:0008422_0.650\|GO:0015926_0.650\|GO:0017042_0.650\|GO:0005773_0.613\|GO:0012505_0.596\|GO:0005783_0.561	IPR006775+459-821+\|IPR008928+393-825+\|IPR012341+528-746+\|IPR014551+19-830+\|IPR024462+83-394+\|IPR052566+20-826+	—	PF04685+459-821+Glycosyl-hydrolase_family_116,_catalytic_region\|PF12215+83-394+beta-glucosidase_2,_glycosyl-hydrolase_family_116_N-term	—	PTHR12654+20-826+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-830	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.602	94604.280	6.209	-3.500	22.169	16.747	43.012	56.988	11.446	10.723	49.398

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	midnightblue	1020.659	1607.572	1257.350	1162.807	1086.904	1012.367	1686.560	982.531	810.805	558.743	666.770

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.584	-0.605	—	-0.129	—	0.747	—	0.923	—	—	—	—	—

No JSON data available for plots.

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