Hg_chrom3_TN10mRNA_5922
Organism: Heterodera glycines Gene Locus: chr3:8155964-8158357 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 0.775 | 0.758 | 0.287 | 0.833 | 0.855 | 1.687 | 1.042 | 1.111 | 1.577 | 0.631 | 1.716 | 1.157 | 1.042 | 1.02 | 1.071 | 0.751 | 0.631 | 1.282 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5628
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.153
|
0.661
|
0.372
|
0.122
|
0.094
|
0.456
|
0.155
|
0.010
|
0.087
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007946
|
1.000
|
1.000
|
Hsc_gene_87.t1
|
Hsc_gene_87.t1
|
— | — |
KAK5980631.1 Translocase Inner Mitochondrial Membrane [Trichostrongylus colubriformis]
|
No
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.886|GO:0110165_0.886|GO:0016020_0.820|GO:0005622_0.774|GO:0005737_0.774|GO:0043226_0.735|GO:0043229_0.721|GO:0043227_0.715|GO:0043231_0.700|GO:0008150_0.687|GO:0009987_0.616|GO:0031090_0.598|GO:0005739_0.573|GO:0031967_0.567|GO:0005740_0.557|GO:0031966_0.557|GO:0019866_0.552|GO:0005743_0.551
|
— | — |
PF02466+109-215+Tim17/Tim22/Tim23/Pmp24_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12
|
1.000
|
13-240
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
25823.480
|
7.380
|
2.500
|
20.417
|
11.250
|
39.167
|
60.833
|
11.250
|
9.167
|
51.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
1273.097
|
1250.801
|
1122.334
|
1467.627
|
1645.426
|
1335.381
|
1088.558
|
977.768
|
758.962
|
1667.618
|
1278.194
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.386
|
0.093
|
0.496
|
0.133
|
-0.286
|
-0.284
|
-0.557
|
0.299
|
— | — | — | — | — |
No JSON data available for plots.