Hg_chrom3_TN10mRNA_5923
Organism: Heterodera glycines Gene Locus: chr3:8158531-8162522 Feature type: polypeptideProtein Sequence
Length: 579
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.285 | 0.879 | 0.357 | 1.094 | 1.55 | 0.535 | 1.382 | 0.96 | 0.98 | 0.811 | 2.133 | 0.96 | 1.694 | 1.269 | 1.332 | 0.849 | 0.785 | 0.664 | 0.406 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5629
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.676
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRNSSGSEAAGNFKQRRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.857
|
0.074
|
0.010
|
0.395
|
0.064
|
0.045
|
0.064
|
0.012
|
0.044
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007947
|
1.000
|
1.000
|
Hsc_gene_88.t1
|
Hsc_gene_88.t1
|
— | — |
KAI3420314.1 Regulation of nuclear pre-mRNA domain-containing protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.864|GO:0110165_0.857|GO:0005622_0.810|GO:0043226_0.751|GO:0043229_0.735|GO:0008150_0.692|GO:0016020_0.692|GO:0009987_0.642|GO:0003674_0.633|GO:0005488_0.619|GO:0043227_0.610|GO:0043231_0.595|GO:0005634_0.585|GO:0005515_0.573|GO:0032991_0.542|GO:0008152_0.530|GO:0043170_0.530|GO:0044238_0.517|GO:0009058_0.515|GO:0006139_0.514|GO:0009059_0.513|GO:0044237_0.513|GO:0044249_0.513|GO:0010467_0.511|GO:0034654_0.507|GO:0016070_0.505|GO:0090304_0.505
|
IPR006569+1-129_7-122_8-121+|IPR008942+2-139_7-125+
|
SM00582+7-122+
|
PF04818+8-121+CID_domain
|
— |
PTHR12460+5-127+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
246-579
|
1.000
|
1-245
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
64552.950
|
7.809
|
9.000
|
25.734
|
8.463
|
51.813
|
48.187
|
14.335
|
11.399
|
52.159
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
violet
|
856.212
|
918.133
|
858.559
|
984.253
|
997.647
|
828.356
|
1067.946
|
868.653
|
786.386
|
709.808
|
742.627
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.326
|
— |
0.306
|
— |
-0.254
|
0.376
|
— |
0.439
|
— | — | — | — | — |
No JSON data available for plots.