Hg_chrom3_TN10mRNA_5924
Organism: Heterodera glycines Gene Locus: chr3:8163025-8163559 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.358 | 2.098 | 0.0 | 2.692 | 0.789 | 0.916 | 0.769 | 1.709 | 0.728 | 0.583 | 2.715 | 0.641 | 0.888 | 1.099 | 0.549 | 0.631 | 0.816 | 1.183 | 0.679 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5630
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.733
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.784
|
0.180
|
0.044
|
0.483
|
0.052
|
0.159
|
0.064
|
0.003
|
0.087
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007948
|
1.000
|
1.000
|
Hsc_gene_89.t1
|
Hsc_gene_89.t1
|
— |
Q17684.1 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Caenorhabditis elegans]
|
KHN73979.1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Toxocara canis]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003899|GO:0005634|GO:0005665|GO:0006351
|
GO:0005575_0.785|GO:0110165_0.710|GO:0005622_0.665|GO:0016020_0.613|GO:0008150_0.601|GO:0043226_0.589|GO:0043229_0.571|GO:0043227_0.560|GO:0043231_0.537|GO:0009987_0.531|GO:0032991_0.510
|
IPR006110+53-106_55-106+|IPR006111+1-129_57-112+|IPR020708+60-74+|IPR028363+1-129+|IPR036161+1-129_3-128+
|
SM01409+53-106+
|
PF01192+55-106+RNA_polymerase_Rpb6
|
— |
PTHR47227+15-129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56
|
1.000
|
57-130
|
9lxo_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
14718.170
|
3.837
|
-23.000
|
38.462
|
7.692
|
50.769
|
49.231
|
10.769
|
27.692
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1075.700
|
833.629
|
946.742
|
1264.649
|
1434.853
|
1228.791
|
1171.826
|
1303.645
|
681.954
|
1125.669
|
935.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.464
|
0.527
|
0.150
|
-0.209
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.