Hg_chrom3_TN10mRNA_5926
Organism: Heterodera glycines Gene Locus: chr3:8164271-8166913 Feature type: polypeptideProtein Sequence
Length: 587
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.773 | 0.753 | 0.867 | 0.587 | 1.193 | 1.267 | 0.487 | 1.278 | 0.946 | 1.312 | 1.136 | 1.804 | 1.514 | 1.081 | 1.634 | 0.998 | 0.81 | 0.903 | 1.048 | 0.601 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5632
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.467
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
2-24
|
0.999
|
26-46
|
1.000
|
— | — |
0.000
|
— | — |
0.242
|
0.867
|
0.438
|
0.159
|
0.044
|
0.036
|
0.051
|
0.029
|
0.038
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007949
|
1.000
|
1.000
|
Hsc_gene_90.t1
|
Hsc_gene_90.t1
|
— |
Q3U2U7.2 Methyltransferase-like protein 17, mitochondrial [Mus musculus]
|
KAI1701088.1 mitochondrial small ribosomal subunit rsm22 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006412|GO:0008168
|
GO:0008150_0.949|GO:0005575_0.904|GO:0009987_0.896|GO:0110165_0.895|GO:0003674_0.863|GO:0005622_0.861|GO:0016020_0.809|GO:0005488_0.802|GO:0043226_0.799|GO:0043229_0.785|GO:0071840_0.763|GO:0043227_0.743|GO:0043231_0.713|GO:0044085_0.699|GO:0036094_0.689|GO:0022613_0.676|GO:0042254_0.674|GO:0042274_0.670|GO:0031974_0.601|GO:0043233_0.601|GO:0070013_0.593|GO:0005737_0.507
|
IPR015324+210-373_408-540+|IPR029063+221-390+|IPR052571+118-492+
|
— |
PF09243+210-373_408-540+Mitochondrial_small_ribosomal_subunit_Rsm22
|
— |
PTHR13184+118-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-587
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
67732.160
|
9.939
|
28.500
|
29.983
|
11.414
|
50.085
|
49.915
|
18.058
|
11.925
|
43.952
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2005.380
|
2446.656
|
2094.971
|
2220.770
|
2105.040
|
1842.296
|
1785.407
|
2417.100
|
2254.224
|
1490.782
|
1817.971
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.454
|
-0.277
|
0.193
|
-0.110
|
-0.177
|
— |
0.285
|
-0.294
|
— | — | — | — | — |
No JSON data available for plots.