Hg_chrom3_TN10mRNA_5927
Organism: Heterodera glycines Gene Locus: chr3:8167043-8169144 Feature type: polypeptideProtein Sequence
Length: 464
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.652 | 1.053 | 1.019 | 0.595 | 1.616 | 0.663 | 0.539 | 1.185 | 1.341 | 1.311 | 0.816 | 1.014 | 2.215 | 0.746 | 1.144 | 1.108 | 0.707 | 1.078 | 1.326 | 0.634 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5633
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
LGEV
|
— | — | — | — |
1-21
|
0.858
|
0.998
|
1.000
|
1.000
|
0.227
|
0.162
|
0.048
|
0.195
|
0.950
|
0.356
|
0.455
|
0.018
|
0.225
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007950
|
1.000
|
1.000
|
Hsc_gene_91.t1
|
Hsc_gene_91.t1
|
— |
Q6GNG3.1 Protein disulfide-isomerase TMX3 [Xenopus laevis]
|
AVA09659.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.841|GO:0110165_0.837|GO:0005622_0.733|GO:0016020_0.721|GO:0005737_0.670|GO:0043226_0.659|GO:0008150_0.654|GO:0071944_0.647|GO:0043229_0.640|GO:0005886_0.630|GO:0043227_0.628|GO:0043231_0.596|GO:0009987_0.526|GO:0005773_0.508
|
IPR013766+22-131_38-128+|IPR017937+45-63+|IPR036249+23-130+|IPR052250+8-449+
|
— |
PF00085+38-128+Thioredoxin
|
— |
PTHR46426+8-449+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
437-464
|
1.000
|
1-436
|
5d8i_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
53452.860
|
4.862
|
-14.500
|
28.664
|
14.224
|
47.845
|
52.155
|
13.362
|
15.302
|
45.043
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
1177.109
|
1993.493
|
1654.222
|
1245.202
|
1088.798
|
1013.150
|
1139.152
|
1562.484
|
996.185
|
766.525
|
864.951
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.499
|
-0.816
|
-0.301
|
-0.225
|
— |
0.179
|
0.519
|
-0.313
|
— | — | — | — | — |